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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183869 (43 seq.)
>W1711410527
MGQB01000024
Unclassified
Deltaproteobacteria bacterium RBG_13_43_22 [MGQB]
11548
11472
-
Asp
GTC
[ENA]
¡û
>C010027
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
2084309
2084233
-
Asp
GTC
[Ensembl]
¡û
>C010029
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
2084088
2084012
-
Asp
GTC
[Ensembl]
¡û
>C010128
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1953881
1953805
-
Asp
GTC
[Ensembl]
¡û
>C010130
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1953658
1953582
-
Asp
GTC
[Ensembl]
¡û
>C010239
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2223058
2223134
+
Asp
GTC
[Ensembl]
¡û
>C010241
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2223289
2223365
+
Asp
GTC
[Ensembl]
¡û
>w018095
AASH01000002
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
15296
15218
-
Asp
GTC
[ENA]
¡û
>w018093
AASH01000002
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
15507
15434
-
Asp
GTC
[ENA]
¡û
>WENV180258811
OBEQ011045412
[OBEQ] groundwater metagenome; groundwater
388
312
-
Asp
GTC
[ENA]
¢þ
>WENV180315276
OBKH01054822
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
192
268
+
Asp
GTC
[ENA]
¢þ
>WENV180363425
OBNY01051851
[OBNY] marine metagenome; ENVO:00002010
8
84
+
Asp
GTC
[ENA]
¢þ
>WENV181165973
OEIS01338782
[OEIS] soil metagenome; soil
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV181231235
OFEK01015275
[OFEK] activated sludge metagenome; Anaerobic digester
1280
1356
+
Asp
GTC
[ENA]
¢þ
>WENV181231237
OFEK01015275
[OFEK] activated sludge metagenome; Anaerobic digester
1478
1554
+
Asp
GTC
[ENA]
¢þ
>WENV170002376
AGTN01011664
[AGTN] bioreactor metagenome; poplar biomass
179
255
+
Asp
GTC
[ENA]
¢þ
>WENV170007700
AMWB02151424
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1889
1813
-
Asp
GTC
[ENA]
¢þ
>C191000637
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1917633
1917557
-
Asp
GTC
-
¡û
>C191000639
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1917409
1917333
-
Asp
GTC
-
¡û
>W09100200
AAAS03000002
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
21550
21626
+
Asp
GTC
[ENA]
¡û
>W09100202
AAAS03000002
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
21771
21847
+
Asp
GTC
[ENA]
¡û
>W09105085
AAON01000072
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
14970
14894
-
Asp
GTC
[ENA]
¡û
>W09105087
AAON01000072
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
14739
14663
-
Asp
GTC
[ENA]
¡û
>C09106353
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
2902751
2902827
+
Asp
GTC
[Ensembl]
¡û
>C09106355
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
2902963
2903039
+
Asp
GTC
[Ensembl]
¡û
>W1810486160
QAXR01000005
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
135077
135001
-
Asp
GTC
[ENA]
¡û
>W1810486162
QAXR01000005
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
134879
134803
-
Asp
GTC
[ENA]
¡û
>C151059731
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
1588106
1588182
+
Asp
GTC
[Ensembl]
¡û
>C151059733
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
1588288
1588364
+
Asp
GTC
[Ensembl]
¡û
>C10107470
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1921037
1920961
-
Asp
GTC
[Ensembl]
¡û
>C10107472
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1920814
1920738
-
Asp
GTC
[Ensembl]
¡û
>W1511500989
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1307494
1307570
+
Asp
GTC
[ENA]
¡û
>W1511500991
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1307717
1307793
+
Asp
GTC
[ENA]
¡û
>C161025451
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
3810533
3810609
+
Asp
GTC
[Ensembl]
¡û
>C161025453
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
3810756
3810832
+
Asp
GTC
[Ensembl]
¡û
>C161080239
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
1759207
1759283
+
Asp
GTC
-
¡û
>C161080241
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
1759430
1759506
+
Asp
GTC
-
¡û
>W121010717
AGJM01000003
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
121514
121590
+
Asp
GTC
[ENA]
¡û
>W121010719
AGJM01000003
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
121735
121811
+
Asp
GTC
[ENA]
¡û
>W1610046419
BBCJ01000001
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
93420
93496
+
Asp
GTC
[ENA]
¡û
>W1610046421
BBCJ01000001
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
93634
93710
+
Asp
GTC
[ENA]
¡û
>W1710043215
BBCJ01000001
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
93420
93496
+
Asp
GTC
[ENA]
¡û
>W1710043217
BBCJ01000001
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
93634
93710
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK