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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183891 (75 seq.)
>W1711137453
LVBK01000013
Spirochaetota
Spirochaetales bacterium Spiro_09 [LVBK]
135478
135554
+
Pro
GGG
[ENA]
¡û
>W1711137479
LVBL01000006
Spirochaetota
Spirochaetales bacterium Spiro_10 [LVBL]
106921
106997
+
Pro
GGG
[ENA]
¡û
>W131000366
AGEB01000011
Spirochaetota
Treponema denticola US-Trep [AGEB]
15853
15780
-
Pro
GGG
[ENA]
¡û
>W131003038
AHAB01000002
Spirochaetota
Treponema denticola SP23 [AHAB]
518229
518156
-
Pro
GGG
[ENA]
¡û
>W131003155
AHAD01000010
Spirochaetota
Treponema denticola SP44 [AHAD]
36077
36004
-
Pro
GGG
[ENA]
¡û
>W131205953
ATFF01000006
Spirochaetota
Treponema maltophilum ATCC 51939 [ATFF]
713726
713653
-
Pro
GGG
[ENA]
¡û
>C025497
AE017226
Spirochaetota
Treponema denticola ATCC 35405 [AE017226]
1797981
1797908
-
Pro
GGG
[Ensembl]
¡û
>W141005313
AGDQ01000001
Spirochaetota
Treponema denticola AL-2 [AGDQ]
21955
22028
+
Pro
GGG
[ENA]
¡û
>W141005397
AGDR01000041
Spirochaetota
Treponema denticola ASLM [AGDR]
2610
2537
-
Pro
GGG
[ENA]
¡û
>W141005467
AGDT01000017
Spirochaetota
Treponema denticola ATCC 33521 [AGDT]
7614
7687
+
Pro
GGG
[ENA]
¡û
>W141005493
AGDU01000004
Spirochaetota
Treponema denticola ATCC 35404 [AGDU]
183989
183916
-
Pro
GGG
[ENA]
¡û
>W141005538
AGDV01000004
Spirochaetota
Treponema denticola H-22 [AGDV]
33995
33922
-
Pro
GGG
[ENA]
¡û
>W141005661
AGDY01000001
Spirochaetota
Treponema denticola OTK [AGDY]
185627
185554
-
Pro
GGG
[ENA]
¡û
>W141005780
AGEA01000019
Spirochaetota
Treponema denticola SP37 [AGEA]
36065
35992
-
Pro
GGG
[ENA]
¡û
>WENV180098819
MTBK01268726
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
565
491
-
Pro
GGG
[ENA]
¢þ
>W141055880
AOTM01000006
Spirochaetota
Treponema pedis str. T M1 [AOTM]
14362
14435
+
Pro
GGG
[ENA]
¡û
>W141055951
AOTN01000177
Spirochaetota
Treponema pedis str. B 683 [AOTN]
7810
7737
-
Pro
GGG
[ENA]
¡û
>W141055983
AOTO01000242
Spirochaetota
Treponema pedis isoM1111 [AOTO]
1166
1093
-
Pro
GGG
[ENA]
¡û
>W141056030
AOTP01000093
Spirochaetota
Treponema pedis isoE1186 [AOTP]
19410
19483
+
Pro
GGG
[ENA]
¡û
>W141056073
AOTQ01000132
Spirochaetota
Treponema pedis isoM1220 [AOTQ]
8790
8863
+
Pro
GGG
[ENA]
¡û
>W141056114
AOTR01000085
Spirochaetota
Treponema pedis isoM1224 [AOTR]
20989
21062
+
Pro
GGG
[ENA]
¡û
>W141064717
AQCF01000038
Spirochaetota
Treponema phagedenis 4A [AQCF]
254753
254680
-
Pro
GGG
[ENA]
¡û
>WENV180727698
ODGU01010070
[ODGU] human metagenome; G_DNA_Supragingival plaque
272
199
-
Pro
GGG
[ENA]
¢þ
>WENV180751685
ODHS01109628
[ODHS] human metagenome; G_DNA_Supragingival plaque
61
134
+
Pro
GGG
[ENA]
¢þ
>WENV180768124
ODIG01002840
[ODIG] human metagenome; G_DNA_Tongue dorsum
1394
1467
+
Pro
GGG
[ENA]
¢þ
>WENV180775116
ODIJ01237934
[ODIJ] human metagenome; G_DNA_Tongue dorsum
100
27
-
Pro
GGG
[ENA]
¢þ
>WENV180788898
ODIS01147141
[ODIS] human metagenome; G_DNA_Supragingival plaque
369
444
+
Pro
GGG
[ENA]
¢þ
>WENV180797118
ODJB01030482
[ODJB] human metagenome; G_DNA_Supragingival plaque
59
132
+
Pro
GGG
[ENA]
¢þ
>WENV180810076
ODJK01110909
[ODJK] human metagenome; G_DNA_Subgingival plaque
340
267
-
Pro
GGG
[ENA]
¢þ
>WENV180853435
ODKW01111566
[ODKW] human metagenome; G_DNA_Tongue dorsum
214
141
-
Pro
GGG
[ENA]
¢þ
>WENV180862329
ODLE01078578
[ODLE] human metagenome; G_DNA_Tongue dorsum
227
154
-
Pro
GGG
[ENA]
¢þ
>WENV180881174
ODLZ01200817
[ODLZ] human metagenome; G_DNA_Tongue dorsum
112
39
-
Pro
GGG
[ENA]
¢þ
>WENV180930765
ODTP01000300
[ODTP] human metagenome; G_DNA_Tongue dorsum
1483
1556
+
Pro
GGG
[ENA]
¢þ
>WENV180939206
ODTX01020313
[ODTX] human metagenome; G_DNA_Supragingival plaque
185
112
-
Pro
GGG
[ENA]
¢þ
>WENV180944806
ODUC01037157
[ODUC] human metagenome; G_DNA_Supragingival plaque
1277
1350
+
Pro
GGG
[ENA]
¢þ
>WENV180951442
ODUH01024447
[ODUH] human metagenome; G_DNA_Subgingival plaque
892
965
+
Pro
GGG
[ENA]
¢þ
>WENV180960624
ODUM01086111
[ODUM] human metagenome; G_DNA_Tongue dorsum
289
216
-
Pro
GGG
[ENA]
¢þ
>WENV180968775
ODUT01075192
[ODUT] human metagenome; G_DNA_Tongue dorsum
305
378
+
Pro
GGG
[ENA]
¢þ
>WENV180976980
ODUY01390282
[ODUY] human metagenome; G_DNA_Supragingival plaque
188
115
-
Pro
GGG
[ENA]
¢þ
>WENV180980336
ODVE01000048
[ODVE] human metagenome; G_DNA_Supragingival plaque
56538
56463
-
Pro
GGG
[ENA]
¢þ
>WENV180980404
ODVE01000118
[ODVE] human metagenome; G_DNA_Supragingival plaque
14904
14977
+
Pro
GGG
[ENA]
¢þ
>WENV181009803
ODWE01224530
[ODWE] human metagenome; G_DNA_Supragingival plaque
76
149
+
Pro
GGG
[ENA]
¢þ
>WENV181039581
ODXQ01030366
[ODXQ] human metagenome; G_DNA_Tongue dorsum
241
314
+
Pro
GGG
[ENA]
¢þ
>WENV181044598
ODXV01017663
[ODXV] human metagenome; G_DNA_Tongue dorsum
148
75
-
Pro
GGG
[ENA]
¢þ
>WENV181050174
ODYD01007849
[ODYD] human metagenome; G_DNA_Supragingival plaque
691
616
-
Pro
GGG
[ENA]
¢þ
>WENV181076113
OEAP01001765
[OEAP] human metagenome; G_DNA_Supragingival plaque
6740
6667
-
Pro
GGG
[ENA]
¢þ
>WENV181079578
OEAS01009452
[OEAS] human metagenome; G_DNA_Supragingival plaque
4548
4475
-
Pro
GGG
[ENA]
¢þ
>WENV181080594
OEAS01060077
[OEAS] human metagenome; G_DNA_Supragingival plaque
1159
1234
+
Pro
GGG
[ENA]
¢þ
>WENV181091110
OEBC01013238
[OEBC] human metagenome; G_DNA_Supragingival plaque
83
156
+
Pro
GGG
[ENA]
¢þ
>WENV181095066
OEBY01002877
[OEBY] human metagenome; G_DNA_Tongue dorsum
7348
7275
-
Pro
GGG
[ENA]
¢þ
>WENV181179525
OEJT01006814
[OEJT] human metagenome; G_DNA_Supragingival plaque
525
452
-
Pro
GGG
[ENA]
¢þ
>W141146178
AWVH01000025
Spirochaetota
Treponema lecithinolyticum ATCC 700332 [AWVH]
12070
11997
-
Pro
GGG
[ENA]
¡û
>WENV183710854
PDWI01054658
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2826
2751
-
Pro
GGG
[ENA]
¢þ
>WENV183711198
PDWI01063082
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
934
861
-
Pro
GGG
[ENA]
¢þ
>WENV183714664
PDWI01196933
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
696
623
-
Pro
GGG
[ENA]
¢þ
>WENV183719917
PDWJ01022963
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2618
2545
-
Pro
GGG
[ENA]
¢þ
>WENV183720813
PDWJ01046169
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1823
1750
-
Pro
GGG
[ENA]
¢þ
>WENV183722176
PDWJ01110355
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
123
50
-
Pro
GGG
[ENA]
¢þ
>WENV170671194
LAHU01024334
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
617
541
-
Pro
GGG
[ENA]
¢þ
>WENV170686804
LFRM01163868
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
928
1004
+
Pro
GGG
[ENA]
¢þ
>C141003679
CP004120
Spirochaetota
Treponema pedis str. T A4 [CP004120]
2598410
2598337
-
Pro
GGG
[Ensembl]
¡û
>C151046049
CP009228
Spirochaetota
Treponema putidum OMZ 758 [CP009228]
2187945
2187872
-
Pro
GGG
[Ensembl]
¡û
>W1510014382
BBPV01000086
Spirochaetota
Treponema endosymbiont of Eucomonympha sp. of Eucomonympha sp. C1 [BBPV]
275
200
-
Pro
GGG
[ENA]
¡û
>W1510014394
BBPW01000002
Spirochaetota
Treponema endosymbiont of Eucomonympha sp. of Eucomonympha sp. D11 [BBPW]
8064
8139
+
Pro
GGG
[ENA]
¡û
>W1510014432
BBPX01000055
Spirochaetota
Treponema endosymbiont of Eucomonympha sp. of Eucomonympha sp. D2 [BBPX]
1964
1889
-
Pro
GGG
[ENA]
¡û
>W1510014503
BBPY01000478
Spirochaetota
Treponema endosymbiont of Eucomonympha sp. of Eucomonympha sp. E12 [BBPY]
408
333
-
Pro
GGG
[ENA]
¡û
>W1510014521
BBPZ01000133
Spirochaetota
Treponema endosymbiont of Eucomonympha sp. of Eucomonympha sp. E8 [BBPZ]
15984
15909
-
Pro
GGG
[ENA]
¡û
>W1510074529
CDNC01000003
Spirochaetota
Treponema phagedenis V1 [CDNC]
92026
91953
-
Pro
GGG
[ENA]
¡û
>W11115149
ADEC01000014
Spirochaetota
Treponema denticola F0402 [ADEC]
564516
564443
-
Pro
GGG
[ENA]
¡û
>C11122399
CP001841
Spirochaetota
Leadbettera azotonutricia ZAS-9 [CP001841]
1431400
1431324
-
Pro
GGG
[Ensembl]
¡û
>C11122972
CP001843
Spirochaetota
Treponema primitia ZAS-2 [CP001843]
2449017
2448942
-
Pro
GGG
[Ensembl]
¡û
>W11134619
AEEA01000103
Spirochaetota
Treponema primitia ZAS-1 [AEEA]
27043
26968
-
Pro
GGG
[ENA]
¡û
>W11135645
AEFH01000039
Spirochaetota
Treponema phagedenis F0421 [AEFH]
7257
7184
-
Pro
GGG
[ENA]
¡û
>W1610948573
LVBK01000013
Spirochaetota
Spirochaetales bacterium Spiro_09 [LVBK]
135478
135554
+
Pro
GGG
[ENA]
¡û
>W1610948599
LVBL01000006
Spirochaetota
Spirochaetales bacterium Spiro_10 [LVBL]
106921
106997
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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