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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183897 (66 seq.)
>W131000349
AGEB01000003
Spirochaetota
Treponema denticola US-Trep [AGEB]
230180
230253
+
Ala
TGC
[ENA]
¡û
>W131003066
AHAB01000009
Spirochaetota
Treponema denticola SP23 [AHAB]
227154
227227
+
Ala
TGC
[ENA]
¡û
>W131003111
AHAC01000024
Spirochaetota
Treponema denticola SP32 [AHAC]
60249
60176
-
Ala
TGC
[ENA]
¡û
>W131003114
AHAD01000001
Spirochaetota
Treponema denticola SP44 [AHAD]
535281
535208
-
Ala
TGC
[ENA]
¡û
>W131003142
AHAD01000009
Spirochaetota
Treponema denticola SP44 [AHAD]
38912
38985
+
Ala
TGC
[ENA]
¡û
>W131205806
ATFC01000009
Spirochaetota
Treponema vincentii F0403 [ATFC]
191723
191796
+
Ala
TGC
[ENA]
¡û
>C025465
AE017226
Spirochaetota
Treponema denticola ATCC 35405 [AE017226]
611869
611942
+
Ala
TGC
[Ensembl]
¡û
>WENV180009883
FLSC01143695
[FLSC] metagenome; saliva
1
74
+
Ala
TGC
[ENA]
¢þ
>WENV180015313
FQKF010525456
[FQKF] soil metagenome; Soil
83
156
+
Ala
TGC
[ENA]
¢þ
>W141005326
AGDQ01000003
Spirochaetota
Treponema denticola AL-2 [AGDQ]
230753
230680
-
Ala
TGC
[ENA]
¡û
>W141005381
AGDR01000029
Spirochaetota
Treponema denticola ASLM [AGDR]
35792
35865
+
Ala
TGC
[ENA]
¡û
>W141005398
AGDS01000001
Spirochaetota
Treponema denticola ATCC 33520 [AGDS]
3258
3185
-
Ala
TGC
[ENA]
¡û
>W141005482
AGDT01000022
Spirochaetota
Treponema denticola ATCC 33521 [AGDT]
148167
148094
-
Ala
TGC
[ENA]
¡û
>W141005521
AGDU01000028
Spirochaetota
Treponema denticola ATCC 35404 [AGDU]
132164
132237
+
Ala
TGC
[ENA]
¡û
>W141005564
AGDV01000020
Spirochaetota
Treponema denticola H-22 [AGDV]
136046
136119
+
Ala
TGC
[ENA]
¡û
>W141005570
AGDW01000001
Spirochaetota
Treponema denticola H1-T [AGDW]
225229
225156
-
Ala
TGC
[ENA]
¡û
>W141005655
AGDX01000020
Spirochaetota
Treponema denticola MYR-T [AGDX]
42672
42599
-
Ala
TGC
[ENA]
¡û
>W141005688
AGDY01000009
Spirochaetota
Treponema denticola OTK [AGDY]
124228
124301
+
Ala
TGC
[ENA]
¡û
>W141005723
AGDZ01000027
Spirochaetota
Treponema denticola SP33 [AGDZ]
229820
229893
+
Ala
TGC
[ENA]
¡û
>W141005763
AGEA01000013
Spirochaetota
Treponema denticola SP37 [AGEA]
83308
83381
+
Ala
TGC
[ENA]
¡û
>WENV180241158
OBDF01051322
[OBDF] human oral metagenome; human oral
63
136
+
Ala
TGC
[ENA]
¢þ
>WENV180548446
OCIW01038649
[OCIW] human oral metagenome; human oral
117
190
+
Ala
TGC
[ENA]
¢þ
>W141055922
AOTM01000288
Spirochaetota
Treponema pedis str. T M1 [AOTM]
674
601
-
Ala
TGC
[ENA]
¡û
>W141055965
AOTN01000310
Spirochaetota
Treponema pedis str. B 683 [AOTN]
459
386
-
Ala
TGC
[ENA]
¡û
>W141056049
AOTP01000313
Spirochaetota
Treponema pedis isoE1186 [AOTP]
473
400
-
Ala
TGC
[ENA]
¡û
>W141056087
AOTQ01000229
Spirochaetota
Treponema pedis isoM1220 [AOTQ]
707
780
+
Ala
TGC
[ENA]
¡û
>W141056137
AOTR01000253
Spirochaetota
Treponema pedis isoM1224 [AOTR]
679
752
+
Ala
TGC
[ENA]
¡û
>W141064713
AQCF01000038
Spirochaetota
Treponema phagedenis 4A [AQCF]
82230
82303
+
Ala
TGC
[ENA]
¡û
>WENV180721933
ODGL01033038
[ODGL] human metagenome; G_DNA_Subgingival plaque
12
85
+
Ala
TGC
[ENA]
¢þ
>WENV180729212
ODGU01261238
[ODGU] human metagenome; G_DNA_Supragingival plaque
66
139
+
Ala
TGC
[ENA]
¢þ
>WENV180735178
ODGZ01083952
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1
74
+
Ala
TGC
[ENA]
¢þ
>WENV180751948
ODHS01274434
[ODHS] human metagenome; G_DNA_Supragingival plaque
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV180769956
ODIG01263329
[ODIG] human metagenome; G_DNA_Tongue dorsum
72
145
+
Ala
TGC
[ENA]
¢þ
>WENV180789345
ODIS01465112
[ODIS] human metagenome; G_DNA_Supragingival plaque
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV180803160
ODJE01048364
[ODJE] human metagenome; G_DNA_Tongue dorsum
583
510
-
Ala
TGC
[ENA]
¢þ
>WENV180809953
ODJK01076334
[ODJK] human metagenome; G_DNA_Subgingival plaque
284
357
+
Ala
TGC
[ENA]
¢þ
>WENV180884410
ODMC01126742
[ODMC] human metagenome; G_DNA_Tongue dorsum
72
145
+
Ala
TGC
[ENA]
¢þ
>WENV180925298
ODTK01079785
[ODTK] human metagenome; G_DNA_Supragingival plaque
301
228
-
Ala
TGC
[ENA]
¢þ
>WENV180949475
ODUG01018158
[ODUG] human metagenome; G_DNA_Tongue dorsum
1449
1376
-
Ala
TGC
[ENA]
¢þ
>WENV180982035
ODVE01125981
[ODVE] human metagenome; G_DNA_Supragingival plaque
101
174
+
Ala
TGC
[ENA]
¢þ
>WENV181008841
ODWE01015784
[ODWE] human metagenome; G_DNA_Supragingival plaque
2290
2217
-
Ala
TGC
[ENA]
¢þ
>WENV181039306
ODXQ01016286
[ODXQ] human metagenome; G_DNA_Tongue dorsum
153
226
+
Ala
TGC
[ENA]
¢þ
>WENV181050561
ODYD01026533
[ODYD] human metagenome; G_DNA_Supragingival plaque
375
448
+
Ala
TGC
[ENA]
¢þ
>WENV181067340
ODZI01013748
[ODZI] human metagenome; G_DNA_Supragingival plaque
2231
2158
-
Ala
TGC
[ENA]
¢þ
>WENV181074193
OEAO01004421
[OEAO] human metagenome; G_DNA_Tongue dorsum
736
809
+
Ala
TGC
[ENA]
¢þ
>WENV181077810
OEAP01157172
[OEAP] human metagenome; G_DNA_Supragingival plaque
157
84
-
Ala
TGC
[ENA]
¢þ
>WENV181081285
OEAS01170306
[OEAS] human metagenome; G_DNA_Supragingival plaque
191
264
+
Ala
TGC
[ENA]
¢þ
>WENV181096444
OEBY01139817
[OEBY] human metagenome; G_DNA_Tongue dorsum
72
145
+
Ala
TGC
[ENA]
¢þ
>WENV181140288
OEGN01096233
[OEGN] human metagenome; G_DNA_Tongue dorsum
239
166
-
Ala
TGC
[ENA]
¢þ
>WENV181182947
OEJV01086813
[OEJV] human metagenome; G_DNA_Supragingival plaque
84
157
+
Ala
TGC
[ENA]
¢þ
>WENV183507907
OMGZ01000262
[OMGZ] human oral metagenome; human oral
490
563
+
Ala
TGC
[ENA]
¢þ
>WENV183509612
OMHJ01000712
[OMHJ] human oral metagenome; human oral
2243
2170
-
Ala
TGC
[ENA]
¢þ
>WENV183509997
OMHL01000736
[OMHL] human oral metagenome; human oral
1268
1195
-
Ala
TGC
[ENA]
¢þ
>WENV170670821
LAHU01001920
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
490
564
+
Ala
TGC
[ENA]
¢þ
>C141003680
CP004120
Spirochaetota
Treponema pedis str. T A4 [CP004120]
2544316
2544243
-
Ala
TGC
[Ensembl]
¡û
>C151045981
CP009227
Spirochaetota
Treponema sp. OMZ 838 [CP009227]
1284967
1285040
+
Ala
TGC
[Ensembl]
¡û
>C151046003
CP009227
Spirochaetota
Treponema sp. OMZ 838 [CP009227]
2112554
2112627
+
Ala
TGC
[Ensembl]
¡û
>C151046039
CP009228
Spirochaetota
Treponema putidum OMZ 758 [CP009228]
2795148
2795075
-
Ala
TGC
[Ensembl]
¡û
>C151046056
CP009228
Spirochaetota
Treponema putidum OMZ 758 [CP009228]
618757
618684
-
Ala
TGC
[Ensembl]
¡û
>W10106182
ACYH01000065
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
18
91
+
Ala
TGC
[ENA]
¡û
>W1510074559
CDNC01000046
Spirochaetota
Treponema phagedenis V1 [CDNC]
32549
32622
+
Ala
TGC
[ENA]
¡û
>W11108505
ACYH01000065
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
18
91
+
Ala
TGC
[ENA]
¡û
>C11119665
CP002868
Spirochaetota
Gracilinema caldarium DSM 7334 [CP002868]
491756
491829
+
Ala
TGC
[Ensembl]
¡û
>C11119684
CP002868
Spirochaetota
Gracilinema caldarium DSM 7334 [CP002868]
1990579
1990506
-
Ala
TGC
[Ensembl]
¡û
>C11122971
CP001843
Spirochaetota
Treponema primitia ZAS-2 [CP001843]
2697800
2697727
-
Ala
TGC
[Ensembl]
¡û
>W11134620
AEEA01000126
Spirochaetota
Treponema primitia ZAS-1 [AEEA]
137
210
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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