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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183901 (74 seq.)
>W1711068967
LSFF01000005
Bacillota
Latilactobacillus sakei [LSFF]
87237
87312
+
Arg
TCT
[ENA]
¡û
>W131196460
ASTI01000010
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
56677
56602
-
Arg
TCT
[ENA]
¡û
>W1711484725
MKDC01000004
Bacillota
Latilactobacillus sakei [MKDC]
51290
51365
+
Arg
TCT
[ENA]
¡û
>W1711484766
MKDD01000001
Bacillota
Latilactobacillus sakei [MKDD]
134099
134024
-
Arg
TCT
[ENA]
¡û
>W1711484817
MKDE01000001
Bacillota
Latilactobacillus sakei [MKDE]
187795
187720
-
Arg
TCT
[ENA]
¡û
>W1711484923
MKDG01000006
Bacillota
Latilactobacillus curvatus [MKDG]
13732
13659
-
Arg
TCT
[ENA]
¡û
>W1711485018
MKDI01000023
Bacillota
Latilactobacillus sakei [MKDI]
68470
68545
+
Arg
TCT
[ENA]
¡û
>W1711485042
MKDJ01000010
Bacillota
Latilactobacillus sakei [MKDJ]
152872
152797
-
Arg
TCT
[ENA]
¡û
>W1711485235
MKDR01000007
Bacillota
Latilactobacillus curvatus [MKDR]
43159
43232
+
Arg
TCT
[ENA]
¡û
>W1711487498
MKGB01000008
Bacillota
Latilactobacillus sakei [MKGB]
121510
121585
+
Arg
TCT
[ENA]
¡û
>W1711487535
MKGC01000001
Bacillota
Latilactobacillus curvatus [MKGC]
3118
3191
+
Arg
TCT
[ENA]
¡û
>W1711487558
MKGD01000001
Bacillota
Latilactobacillus curvatus [MKGD]
104772
104699
-
Arg
TCT
[ENA]
¡û
>C171057575
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1358549
1358476
-
Arg
TCT
-
¡û
>C012659
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
643601
643528
-
Arg
TCT
[Ensembl]
¡û
>W141228338
BALW01000001
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
463903
463978
+
Arg
TCT
[ENA]
¡û
>WENV183201613
OLPW01064248
[OLPW] human gut metagenome; faeces
370
295
-
Arg
TCT
[ENA]
¢þ
>C181003619
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
1790498
1790573
+
Arg
TCT
-
¡û
>C181003679
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1271050
1271125
+
Arg
TCT
-
¡û
>C181044653
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
631906
631831
-
Arg
TCT
-
¡û
>C181066110
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1437886
1437813
-
Arg
TCT
-
¡û
>C181066177
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1434131
1434058
-
Arg
TCT
-
¡û
>C181071518
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
195260
195185
-
Arg
TCT
-
¡û
>C181113669
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1506228
1506153
-
Arg
TCT
-
¡û
>C181114064
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
460982
461057
+
Arg
TCT
-
¡û
>C181123572
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
725340
725265
-
Arg
TCT
-
¡û
>C181186107
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1328043
1327970
-
Arg
TCT
-
¡û
>C181194851
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1434311
1434238
-
Arg
TCT
-
¡û
>C181227456
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
649216
649141
-
Arg
TCT
-
¡û
>C181227518
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
726825
726750
-
Arg
TCT
-
¡û
>C181227579
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
707946
707871
-
Arg
TCT
-
¡û
>C181227640
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
730766
730691
-
Arg
TCT
-
¡û
>C181227701
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
687352
687277
-
Arg
TCT
-
¡û
>C191004223
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1342952
1342879
-
Arg
TCT
-
¡û
>C191035507
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
620947
621020
+
Arg
TCT
-
¡û
>C191040492
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
176944
177017
+
Arg
TCT
-
¡û
>C191092651
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
1014739
1014664
-
Arg
TCT
-
¡û
>C191092731
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
700420
700345
-
Arg
TCT
-
¡û
>C191092852
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
550563
550488
-
Arg
TCT
-
¡û
>C191092987
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1146304
1146379
+
Arg
TCT
-
¡û
>C191134899
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1418075
1418002
-
Arg
TCT
-
¡û
>W09127587
ACLD01000004
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
75154
75079
-
Arg
TCT
[ENA]
¡û
>W1910180943
BJLN01000006
Bacillota
Latilactobacillus sakei NBRC 3541 [BJLN]
48564
48489
-
Arg
TCT
[ENA]
¡û
>W1910184444
BJOQ01000021
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
3987
3914
-
Arg
TCT
[ENA]
¡û
>W1910471957
FXDK01000010
Bacillota
Latilactobacillus curvatus [FXDK]
35053
35126
+
Arg
TCT
[ENA]
¡û
>W1910751886
MKDL01000009
Bacillota
Latilactobacillus sakei RI-493 [MKDL]
58909
58984
+
Arg
TCT
[ENA]
¡û
>W1910751923
MKDM01000005
Bacillota
Latilactobacillus sakei RI-496 [MKDM]
143106
143181
+
Arg
TCT
[ENA]
¡û
>W1910751955
MKDN01000007
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
123405
123480
+
Arg
TCT
[ENA]
¡û
>W1910752026
MKDO01000020
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
56677
56602
-
Arg
TCT
[ENA]
¡û
>W1910753003
MKGG01000026
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
68468
68543
+
Arg
TCT
[ENA]
¡û
>W1910753049
MKGH01000040
Bacillota
Latilactobacillus sakei RI-517 [MKGH]
121457
121532
+
Arg
TCT
[ENA]
¡û
>W1911493412
OBHK01000004
Bacillota
Latilactobacillus sakei J160x1 [OBHK]
51374
51299
-
Arg
TCT
[ENA]
¡û
>W1911493476
OBHL01000017
Bacillota
Latilactobacillus sakei J156 [OBHL]
32300
32225
-
Arg
TCT
[ENA]
¡û
>W1911493557
OBHN01000004
Bacillota
Latilactobacillus sakei J112 [OBHN]
38483
38408
-
Arg
TCT
[ENA]
¡û
>W1911533887
OKRC01000005
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
25845
25920
+
Arg
TCT
[ENA]
¡û
>W1911551477
OVTU01000001
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
1006816
1006891
+
Arg
TCT
[ENA]
¡û
>W1911631476
PUFE01000027
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
465315
465390
+
Arg
TCT
[ENA]
¡û
>W1911706043
QOSE01000002
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
20661
20586
-
Arg
TCT
[ENA]
¡û
>WENV11100322
AEKF01000069
Food metagenome, Jonggazip commercial cabbage kimchi
15501
15426
-
Arg
TCT
[ENA]
¡û
>W1511344706
JRFY01000024
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
149040
148965
-
Arg
TCT
[ENA]
¡û
>W1511402271
JTJV01000006
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
64558
64485
-
Arg
TCT
[ENA]
¡û
>C161093459
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
661040
661113
+
Arg
TCT
-
¡û
>C161100183
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
1810688
1810615
-
Arg
TCT
[Ensembl]
¡û
>W121008300
AGBU01000016
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
8227
8154
-
Arg
TCT
[ENA]
¡û
>W1610031723
AYZB01000005
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
46849
46922
+
Arg
TCT
[ENA]
¡û
>W1610034074
AZDL01000025
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
21619
21692
+
Arg
TCT
[ENA]
¡û
>W1610034151
AZDN01000001
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
68758
68683
-
Arg
TCT
[ENA]
¡û
>W1610036384
AZFG01000049
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
75208
75133
-
Arg
TCT
[ENA]
¡û
>W1610045565
BBBQ01000038
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
6204
6277
+
Arg
TCT
[ENA]
¡û
>W1610909537
LSFF01000005
Bacillota
Latilactobacillus sakei [LSFF]
87237
87312
+
Arg
TCT
[ENA]
¡û
>W1710028650
AYZB01000005
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
46849
46922
+
Arg
TCT
[ENA]
¡û
>W1710031201
AZDL01000025
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
21619
21692
+
Arg
TCT
[ENA]
¡û
>W1710031278
AZDN01000001
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
68758
68683
-
Arg
TCT
[ENA]
¡û
>W1710033423
AZFG01000049
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
75208
75133
-
Arg
TCT
[ENA]
¡û
>W1710042406
BBBQ01000038
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
6204
6277
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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