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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183986 (36 seq.)
>W1710886840
LMYG01000075
Gammaproteobacteria
Pantoea ananatis [LMYG]
695129
695205
+
Val
GAC
[ENA]
¡û
>W1711517275
MLJJ01000039
Gammaproteobacteria
Pantoea septica [MLJJ]
37898
37974
+
Val
GAC
[ENA]
¡û
>W1711517279
MLJJ01000049
Gammaproteobacteria
Pantoea septica [MLJJ]
23935
23859
-
Val
GAC
[ENA]
¡û
>C171063886
CP017581
Gammaproteobacteria
Pantoea stewartii subsp. stewartii DC283 [CP017581]
2603631
2603555
-
Val
GAC
-
¡û
>WENV182807842
OJWA01000008
[OJWA] human gut metagenome; human gut
97657
97733
+
Val
GAC
[ENA]
¢þ
>WENV182845518
OKJE01000016
[OKJE] human gut metagenome; human gut
76806
76882
+
Val
GAC
[ENA]
¢þ
>WENV182845919
OKJH01002139
[OKJH] human gut metagenome; human gut
291
367
+
Val
GAC
[ENA]
¢þ
>WENV170700115
LIDZ01002944
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
7259
7335
+
Val
GAC
[ENA]
¢þ
>WENV170700117
LIDZ01002944
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
7427
7503
+
Val
GAC
[ENA]
¢þ
>C191126311
CP034474
Gammaproteobacteria
Pantoea agglomerans CFSAN047154 [CP034474]
1575355
1575279
-
Val
GAC
-
¡û
>C191126313
CP034474
Gammaproteobacteria
Pantoea agglomerans CFSAN047154 [CP034474]
1575187
1575111
-
Val
GAC
-
¡û
>C191175044
CP040095
Gammaproteobacteria
Pantoea sp. SO10 [CP040095]
1870369
1870293
-
Val
GAC
-
¡û
>C191175046
CP040095
Gammaproteobacteria
Pantoea sp. SO10 [CP040095]
1870193
1870117
-
Val
GAC
-
¡û
>W141712617
JMRT01000030
Gammaproteobacteria
Pantoea sp. 3.5.1 [JMRT]
63919
63843
-
Val
GAC
[ENA]
¡û
>W141821480
JQNO01000001
Gammaproteobacteria
Pantoea sp. 9140 [JQNO]
1563876
1563800
-
Val
GAC
[ENA]
¡û
>W141821482
JQNO01000001
Gammaproteobacteria
Pantoea sp. 9140 [JQNO]
1563708
1563632
-
Val
GAC
[ENA]
¡û
>W1911081658
NMZW01000001
Gammaproteobacteria
Pantoea ananatis PNA 99-7 [NMZW]
148476
148400
-
Val
GAC
[ENA]
¡û
>W1911081660
NMZW01000001
Gammaproteobacteria
Pantoea ananatis PNA 99-7 [NMZW]
148309
148233
-
Val
GAC
[ENA]
¡û
>W1911492800
OBEC01000011
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
155710
155634
-
Val
GAC
[ENA]
¡û
>W1911492802
OBEC01000011
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
155541
155465
-
Val
GAC
[ENA]
¡û
>W1510093244
CEFR01000091
Gammaproteobacteria
Enterobacter ludwigii LecVs2 [CEFR]
973457
973381
-
Val
GAC
[ENA]
¡û
>W1510093246
CEFR01000091
Gammaproteobacteria
Enterobacter ludwigii LecVs2 [CEFR]
973281
973205
-
Val
GAC
[ENA]
¡û
>W1511683899
LFLX01000001
Gammaproteobacteria
Pantoea ananatis CFH 7-1 [LFLX]
1582013
1582089
+
Val
GAC
[ENA]
¡û
>W1511683901
LFLX01000001
Gammaproteobacteria
Pantoea ananatis CFH 7-1 [LFLX]
1582180
1582256
+
Val
GAC
[ENA]
¡û
>W121032787
AHIE01000010
Gammaproteobacteria
Pantoea stewartii subsp. stewartii DC283 [AHIE]
122322
122246
-
Val
GAC
[ENA]
¡û
>W1610591484
LDSE01000020
Gammaproteobacteria
Pantoea dispersa [LDSE]
270275
270351
+
Val
GAC
[ENA]
¡û
>W1610591486
LDSE01000020
Gammaproteobacteria
Pantoea dispersa [LDSE]
270444
270520
+
Val
GAC
[ENA]
¡û
>W1610631627
LIME01000004
Gammaproteobacteria
Pantoea agglomerans [LIME]
556143
556067
-
Val
GAC
[ENA]
¡û
>W1610631629
LIME01000004
Gammaproteobacteria
Pantoea agglomerans [LIME]
555975
555899
-
Val
GAC
[ENA]
¡û
>W1610748102
LMYG01000075
Gammaproteobacteria
Pantoea ananatis [LMYG]
695129
695205
+
Val
GAC
[ENA]
¡û
>W1710602076
FUXY01000001
Gammaproteobacteria
Pantoea ananatis [FUXY]
727433
727357
-
Val
GAC
[ENA]
¡û
>W1710602078
FUXY01000001
Gammaproteobacteria
Pantoea ananatis [FUXY]
727266
727190
-
Val
GAC
[ENA]
¡û
>W1710710764
LDSE01000020
Gammaproteobacteria
Pantoea dispersa [LDSE]
270275
270351
+
Val
GAC
[ENA]
¡û
>W1710710766
LDSE01000020
Gammaproteobacteria
Pantoea dispersa [LDSE]
270444
270520
+
Val
GAC
[ENA]
¡û
>W1710764442
LIME01000004
Gammaproteobacteria
Pantoea agglomerans [LIME]
556143
556067
-
Val
GAC
[ENA]
¡û
>W1710764444
LIME01000004
Gammaproteobacteria
Pantoea agglomerans [LIME]
555975
555899
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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