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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184097 (30 seq.)
>W1710864856
LMGF01000002
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
168123
168047
-
Arg
CCT
[ENA]
¡û
>W1710912990
LNSB01000055
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
17444
17520
+
Arg
CCT
[ENA]
¡û
>W1710913024
LNSC01000039
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
43693
43617
-
Arg
CCT
[ENA]
¡û
>W1711259765
LYVN01000013
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
28793
28717
-
Arg
CCT
[ENA]
¡û
>W131224703
AUDA01000052
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
29599
29675
+
Arg
CCT
[ENA]
¡û
>W1711503911
MKUB01000041
Alphaproteobacteria
Sphingomonadales bacterium 63-6 [MKUB]
23241
23165
-
Arg
CCT
[ENA]
¡û
>W1712105844
NISK01000009
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
1331
1255
-
Arg
CCT
[ENA]
¡û
>C171019683
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
317499
317575
+
Arg
CCT
-
¡û
>C171094576
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
2260119
2260043
-
Arg
CCT
-
¡û
>WENV180039768
LLBY010156267
[LLBY] soil metagenome; soil from tomato rhizosphere
4472
4396
-
Arg
CCT
[ENA]
¢þ
>WENV180041109
LLBZ010045213
[LLBZ] soil metagenome; soil from tomato rhizosphere
699
775
+
Arg
CCT
[ENA]
¢þ
>WENV180298056
OBJA01154338
[OBJA] soil metagenome; sediment, water from around vicinity
327
251
-
Arg
CCT
[ENA]
¢þ
>W141076266
ATDO01000063
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
50483
50407
-
Arg
CCT
[ENA]
¡û
>W141078472
ATIB01000085
Alphaproteobacteria
Sphingobium baderi LL03 [ATIB]
70860
70936
+
Arg
CCT
[ENA]
¡û
>W141285102
JANF02000081
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
161027
160951
-
Arg
CCT
[ENA]
¡û
>WENV183730412
PJTS01000009
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
184649
184573
-
Arg
CCT
[ENA]
¢þ
>WENV183731577
PJTT01000032
[PJTT] soil metagenome; Soil (2) enriched on wood chips
184649
184573
-
Arg
CCT
[ENA]
¢þ
>W141400518
JDRU02000010
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
33951
33875
-
Arg
CCT
[ENA]
¡û
>W1810789389
QRGP01000001
Alphaproteobacteria
Sphingorhabdus pulchriflava GY_G [QRGP]
428770
428846
+
Arg
CCT
[ENA]
¡û
>C10111678
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
2654377
2654301
-
Arg
CCT
[Ensembl]
¡û
>W1510757078
JACV01000017
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
53074
52998
-
Arg
CCT
[ENA]
¡û
>W1511221225
JNFD01000046
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
10011
9935
-
Arg
CCT
[ENA]
¡û
>W1511324670
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
1429226
1429150
-
Arg
CCT
[ENA]
¡û
>C161021374
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
460377
460453
+
Arg
CCT
[Ensembl]
¡û
>C161043668
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
3381253
3381177
-
Arg
CCT
[Ensembl]
¡û
>C161055643
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
461808
461884
+
Arg
CCT
-
¡û
>W121071138
AJXQ01000072
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
98685
98761
+
Arg
CCT
[ENA]
¡û
>W1610727202
LMGF01000002
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
168123
168047
-
Arg
CCT
[ENA]
¡û
>W1610771349
LNSB01000055
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
17444
17520
+
Arg
CCT
[ENA]
¡û
>W1610771383
LNSC01000039
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
43693
43617
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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