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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184104 (49 seq.)
>w027634
ABCJ01000002
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
78578
78656
+
Asp
GTC
[ENA]
¡û
>WENV180275498
OBHT01048688
[OBHT] metagenome; hydrothermal vent
139
215
+
Asp
GTC
[ENA]
¢þ
>WENV180287216
OBIK01002251
[OBIK] hydrothermal vent metagenome; sea water
558
634
+
Asp
GTC
[ENA]
¢þ
>WENV180288062
OBIL01041858
[OBIL] metagenome; hydrothermal vent
82
158
+
Asp
GTC
[ENA]
¢þ
>WENV180288068
OBIL01043103
[OBIL] metagenome; hydrothermal vent
318
242
-
Asp
GTC
[ENA]
¢þ
>WENV180581198
OCMH01054730
[OCMH] metagenome; diffuse fluid
130
54
-
Asp
GTC
[ENA]
¢þ
>WENV180581826
OCML01003940
[OCML] metagenome; diffuse fluid
166
90
-
Asp
GTC
[ENA]
¢þ
>WENV180634478
OCRB01013234
[OCRB] metagenome; diffuse fluid
317
393
+
Asp
GTC
[ENA]
¢þ
>WENV180647987
OCSI01040777
[OCSI] metagenome; diffuse fluid
189
113
-
Asp
GTC
[ENA]
¢þ
>W141078143
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
979590
979514
-
Asp
GTC
[ENA]
¡û
>W141078153
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
296765
296689
-
Asp
GTC
[ENA]
¡û
>W141078183
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
917250
917174
-
Asp
GTC
[ENA]
¡û
>W141078193
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
277286
277210
-
Asp
GTC
[ENA]
¡û
>W141078223
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
979514
979438
-
Asp
GTC
[ENA]
¡û
>W141078233
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
296726
296650
-
Asp
GTC
[ENA]
¡û
>W141078263
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
961686
961610
-
Asp
GTC
[ENA]
¡û
>W141078273
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
296231
296155
-
Asp
GTC
[ENA]
¡û
>W141078304
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
936727
936651
-
Asp
GTC
[ENA]
¡û
>W141078314
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
282951
282875
-
Asp
GTC
[ENA]
¡û
>W141078344
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
979634
979558
-
Asp
GTC
[ENA]
¡û
>W141078354
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
296778
296702
-
Asp
GTC
[ENA]
¡û
>WENV181209164
OFBD01009379
[OFBD] metagenome; hydrothermal vent
446
370
-
Asp
GTC
[ENA]
¢þ
>WENV181209614
OFBE01014198
[OFBE] metagenome; hydrothermal vent
282
206
-
Asp
GTC
[ENA]
¢þ
>WENV181209845
OFBF01003849
[OFBF] metagenome; hydrothermal vent
719
795
+
Asp
GTC
[ENA]
¢þ
>WENV181211049
OFBJ01005685
[OFBJ] metagenome; hydrothermal vent
304
228
-
Asp
GTC
[ENA]
¢þ
>WENV181212144
OFBM01014911
[OFBM] metagenome; hydrothermal vent
549
473
-
Asp
GTC
[ENA]
¢þ
>WENV181212918
OFBU01001236
[OFBU] metagenome; hydrothermal vent
1610
1534
-
Asp
GTC
[ENA]
¢þ
>WENV181213321
OFBV01000420
[OFBV] metagenome; hydrothermal vent
1711
1787
+
Asp
GTC
[ENA]
¢þ
>WENV181213850
OFBW01001027
[OFBW] metagenome; hydrothermal vent
1714
1790
+
Asp
GTC
[ENA]
¢þ
>WENV181214681
OFBY01006657
[OFBY] metagenome; hydrothermal vent
1199
1123
-
Asp
GTC
[ENA]
¢þ
>WENV181215594
OFCA01003952
[OFCA] metagenome; hydrothermal vent
227
303
+
Asp
GTC
[ENA]
¢þ
>WENV181216105
OFCB01004041
[OFCB] metagenome; hydrothermal vent
1540
1464
-
Asp
GTC
[ENA]
¢þ
>WENV181216502
OFCC01000975
[OFCC] metagenome; hydrothermal vent
306
230
-
Asp
GTC
[ENA]
¢þ
>WENV181224292
OFDE01006011
[OFDE] metagenome; hydrothermal vent
392
468
+
Asp
GTC
[ENA]
¢þ
>WENV181225215
OFDH01015826
[OFDH] metagenome; hydrothermal vent
413
489
+
Asp
GTC
[ENA]
¢þ
>WENV181228286
OFDO01007640
[OFDO] metagenome; hydrothermal vent
748
824
+
Asp
GTC
[ENA]
¢þ
>C08006818
AP009178
Campylobacterota
Nitratiruptor sp. SB155-2 [AP009178]
1302035
1302111
+
Asp
GTC
[Ensembl]
¡û
>WENV183707362
PDWI01008043
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9119
9043
-
Asp
GTC
[ENA]
¢þ
>C191044907
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
597946
598022
+
Asp
GTC
-
¡û
>C191044935
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
403726
403650
-
Asp
GTC
-
¡û
>C191051443
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
1296116
1296040
-
Asp
GTC
-
¡û
>C191051450
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
634466
634390
-
Asp
GTC
-
¡û
>C191177847
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
677907
677983
+
Asp
GTC
-
¡û
>C191177851
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
846053
846129
+
Asp
GTC
-
¡û
>W1910015334
BDME01000001
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
300587
300511
-
Asp
GTC
[ENA]
¡û
>W1910015341
BDME01000002
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
386701
386777
+
Asp
GTC
[ENA]
¡û
>C09108048
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
567707
567783
+
Asp
GTC
[Ensembl]
¡û
>C09108075
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
375889
375813
-
Asp
GTC
[Ensembl]
¡û
>W1710605554
FWWZ01000001
Campylobacterota
Nitratiruptor tergarcus DSM 16512 [FWWZ]
1722509
1722585
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK