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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184108 (27 seq.)
>w027664
ABCJ01000018
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
642
564
-
Thr
TGT
[ENA]
¡û
>w027648
ABCJ01000005
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
28438
28514
+
Thr
TGT
[ENA]
¡û
>WENV180275253
OBHT01000857
[OBHT] metagenome; hydrothermal vent
672
748
+
Thr
TGT
[ENA]
¢þ
>WENV180288527
OBIL01209309
[OBIL] metagenome; hydrothermal vent
192
116
-
Thr
TGT
[ENA]
¢þ
>WENV180694752
OCZS012635449
[OCZS] soil metagenome; soil
103
177
+
Thr
TGT
[ENA]
¢þ
>W141078162
ATHP01000005
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
16560
16484
-
Thr
TGT
[ENA]
¡û
>W141078202
ATHQ01000005
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
15438
15362
-
Thr
TGT
[ENA]
¡û
>W141078242
ATHR01000005
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
16560
16484
-
Thr
TGT
[ENA]
¡û
>W141078282
ATHS01000005
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
16561
16485
-
Thr
TGT
[ENA]
¡û
>W141078323
ATHT01000005
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
16560
16484
-
Thr
TGT
[ENA]
¡û
>W141078363
ATHU01000005
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
16560
16484
-
Thr
TGT
[ENA]
¡û
>WENV181212957
OFBU01002868
[OFBU] metagenome; hydrothermal vent
1243
1167
-
Thr
TGT
[ENA]
¢þ
>WENV181213362
OFBV01000859
[OFBV] metagenome; hydrothermal vent
2832
2756
-
Thr
TGT
[ENA]
¢þ
>WENV181213907
OFBW01002104
[OFBW] metagenome; hydrothermal vent
1613
1537
-
Thr
TGT
[ENA]
¢þ
>WENV181214272
OFBX01000226
[OFBX] metagenome; hydrothermal vent
2042
1966
-
Thr
TGT
[ENA]
¢þ
>WENV181214467
OFBY01000391
[OFBY] metagenome; hydrothermal vent
4611
4535
-
Thr
TGT
[ENA]
¢þ
>WENV181215144
OFBZ01005040
[OFBZ] metagenome; hydrothermal vent
677
753
+
Thr
TGT
[ENA]
¢þ
>WENV181215740
OFCA01010699
[OFCA] metagenome; hydrothermal vent
680
756
+
Thr
TGT
[ENA]
¢þ
>WENV181216217
OFCB01010370
[OFCB] metagenome; hydrothermal vent
709
785
+
Thr
TGT
[ENA]
¢þ
>C191044895
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
150233
150309
+
Thr
TGT
-
¡û
>C191051416
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
155985
156061
+
Thr
TGT
-
¡û
>C191051434
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
1571292
1571216
-
Thr
TGT
-
¡û
>C191177839
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
382059
382135
+
Thr
TGT
-
¡û
>C191177868
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
23239
23163
-
Thr
TGT
-
¡û
>W1910015351
BDME01000007
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
27058
26982
-
Thr
TGT
[ENA]
¡û
>C09108036
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
146586
146662
+
Thr
TGT
[Ensembl]
¡û
>C09108062
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
1643611
1643535
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK