This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184111 (21 seq.)
>W1711582057
MNUW01000145
Bacteroidota
Flavobacteriaceae bacterium CG1_02_35_72 [MNUW]
8475
8401
-
Pro
GGG
[ENA]
¡û
>W1711584459
MNYM01000036
Bacteroidota
Flavobacteriaceae bacterium CG2_30_31_66 [MNYM]
11026
11100
+
Pro
GGG
[ENA]
¡û
>WENV180285134
OBID01242712
[OBID] metagenome; sludge
197
123
-
Pro
GGG
[ENA]
¢þ
>WENV180370596
OBOH01141543
[OBOH] marine metagenome; ENVO:00002010
304
380
+
Pro
GGG
[ENA]
¢þ
>W141079128
ATLG01000006
Bacteroidota
Cellulophaga baltica 4 [ATLG]
430362
430436
+
Pro
GGG
[ENA]
¡û
>W141079161
ATLH01000008
Bacteroidota
Cellulophaga baltica 13 [ATLH]
20591
20665
+
Pro
GGG
[ENA]
¡û
>W141079196
ATLI01000009
Bacteroidota
Cellulophaga baltica 18 [ATLI]
19403
19477
+
Pro
GGG
[ENA]
¡û
>W141079229
ATLJ01000010
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
16630
16704
+
Pro
GGG
[ENA]
¡û
>WENV182576367
OJFX01015087
[OJFX] seawater metagenome; Sea water
508
582
+
Pro
GGG
[ENA]
¢þ
>WENV182581628
OJGX01023344
[OJGX] seawater metagenome; Sea water
75
1
-
Pro
GGG
[ENA]
¢þ
>WENV171002576
NHNJ01088857
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
80
156
+
Pro
GGG
[ENA]
¢þ
>C181067211
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
3461222
3461296
+
Pro
GGG
-
¡û
>W141807593
JPOO01000001
Bacteroidota
Arenibacter algicola [JPOO]
1586439
1586515
+
Pro
GGG
[ENA]
¡û
>W1910796571
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
1442711
1442785
+
Pro
GGG
[ENA]
¡û
>C151061203
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
4329280
4329206
-
Pro
GGG
[Ensembl]
¡û
>C151062878
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
4361777
4361703
-
Pro
GGG
[Ensembl]
¡û
>C11104741
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
331810
331734
-
Pro
GGG
[Ensembl]
¡û
>W1511320943
JQCT01000034
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
408
334
-
Pro
GGG
[ENA]
¡û
>C161047089
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
3586815
3586891
+
Pro
GGG
[Ensembl]
¡û
>W1710514702
FNBD01000016
Bacteroidota
Cellulophaga baltica [FNBD]
47671
47597
-
Pro
GGG
[ENA]
¡û
>W1710606156
FWXO01000008
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
47191
47115
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK