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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184121 (101 seq.)
>W1711136639
LVAK01000137
Bacillota
Clostridiales bacterium Firm_05 [LVAK]
2506
2582
+
Pro
TGG
[ENA]
¡û
>W1711501265
MKRK01000089
Bacillota
Clostridiales bacterium 43-6 [MKRK]
269
193
-
Pro
TGG
[ENA]
¡û
>W1711580918
MNTN01000008
Bacillota
Ruminococcus bicirculans (ex Wegman et al. 2014) bicirculans [MNTN]
11754
11830
+
Pro
TGG
[ENA]
¡û
>WENV180000357
FLNU01001996
[FLNU] bioreactor metagenome; Moose rumen
470
394
-
Pro
TGG
[ENA]
¢þ
>WENV180156311
OAUV01005010
[OAUV] human gut metagenome; faeces
334
258
-
Pro
TGG
[ENA]
¢þ
>WENV180283450
OBID01000117
[OBID] metagenome; sludge
31724
31649
-
Pro
TGG
[ENA]
¢þ
>WENV180286771
OBII01014906
[OBII] human gut metagenome; feces
946
1022
+
Pro
TGG
[ENA]
¢þ
>WENV180336709
OBLG01003921
[OBLG] human gut metagenome; human gut
7350
7274
-
Pro
TGG
[ENA]
¢þ
>WENV180542205
OCHS01081116
[OCHS] human gut metagenome; human gut
231
155
-
Pro
TGG
[ENA]
¢þ
>WENV180604461
OCPS01005881
[OCPS] human gut metagenome; human gut
434
358
-
Pro
TGG
[ENA]
¢þ
>WENV180631810
OCQY01073780
[OCQY] human gut metagenome; human gut
306
382
+
Pro
TGG
[ENA]
¢þ
>WENV180657813
OCVV010704685
[OCVV] gut metagenome; gut
455
531
+
Pro
TGG
[ENA]
¢þ
>WENV180657814
OCVV010704685
[OCVV] gut metagenome; gut
455
531
+
Pro
TGG
[ENA]
¢þ
>WENV180723315
ODGN01000240
[ODGN] human metagenome; G_DNA_Stool
15356
15432
+
Pro
TGG
[ENA]
¢þ
>WENV180826289
ODJZ01001396
[ODJZ] human metagenome; G_DNA_Stool
15406
15482
+
Pro
TGG
[ENA]
¢þ
>W141088564
AUVG01000026
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
173388
173464
+
Pro
TGG
[ENA]
¡û
>WENV180956121
ODUK01000519
[ODUK] human metagenome; G_DNA_Stool
40019
39943
-
Pro
TGG
[ENA]
¢þ
>WENV181056295
ODYJ01002737
[ODYJ] human metagenome; G_DNA_Stool
1410
1486
+
Pro
TGG
[ENA]
¢þ
>WENV181117839
OEFH01001932
[OEFH] human metagenome; G_DNA_Stool
15455
15531
+
Pro
TGG
[ENA]
¢þ
>WENV181172115
OEIV010493952
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
105
32
-
Pro
TGG
[ENA]
¢þ
>WENV181344845
OFMK01004943
[OFMK] human gut metagenome; human gut
4569
4645
+
Pro
TGG
[ENA]
¢þ
>WENV181397954
OFSD01012793
[OFSD] human gut metagenome; human gut
3163
3239
+
Pro
TGG
[ENA]
¢þ
>WENV181418440
OGCM01004136
[OGCM] human gut metagenome; human gut
230
154
-
Pro
TGG
[ENA]
¢þ
>WENV181433883
OGDF01000098
[OGDF] human gut metagenome; human gut
25705
25629
-
Pro
TGG
[ENA]
¢þ
>WENV181450006
OGDY01000029
[OGDY] metagenome; Human gut stool
128555
128479
-
Pro
TGG
[ENA]
¢þ
>WENV181478281
OGFF01023334
[OGFF] metagenome; Human gut stool
1644
1720
+
Pro
TGG
[ENA]
¢þ
>WENV181537046
OGHW01001720
[OGHW] metagenome; Human gut stool
15513
15589
+
Pro
TGG
[ENA]
¢þ
>WENV181538455
OGHY01010635
[OGHY] metagenome; Human gut stool
2342
2418
+
Pro
TGG
[ENA]
¢þ
>WENV181581155
OGKA01002336
[OGKA] metagenome; Human gut stool
11616
11692
+
Pro
TGG
[ENA]
¢þ
>WENV181646406
OGNO01003562
[OGNO] metagenome; Human gut stool
8
84
+
Pro
TGG
[ENA]
¢þ
>WENV181647962
OGNQ01001888
[OGNQ] metagenome; Human gut stool
121
45
-
Pro
TGG
[ENA]
¢þ
>WENV181653206
OGNY01001337
[OGNY] metagenome; Human gut stool
877
801
-
Pro
TGG
[ENA]
¢þ
>WENV181863128
OGWT01000584
[OGWT] human gut metagenome; faeces
1571
1495
-
Pro
TGG
[ENA]
¢þ
>WENV181935197
OGYU01001638
[OGYU] human gut metagenome; faeces
15350
15426
+
Pro
TGG
[ENA]
¢þ
>WENV181987933
OHAN01001871
[OHAN] human gut metagenome; faeces
230
154
-
Pro
TGG
[ENA]
¢þ
>WENV182011937
OHBM01005030
[OHBM] human gut metagenome; faeces
7086
7162
+
Pro
TGG
[ENA]
¢þ
>WENV182017454
OHBW01000088
[OHBW] human gut metagenome; feces
38141
38217
+
Pro
TGG
[ENA]
¢þ
>WENV182024687
OHCH01000044
[OHCH] human gut metagenome; feces
43873
43797
-
Pro
TGG
[ENA]
¢þ
>WENV182051439
OHEG01000667
[OHEG] human gut metagenome; feces
407
331
-
Pro
TGG
[ENA]
¢þ
>WENV182083088
OHGN01005228
[OHGN] human gut metagenome; feces
966
1042
+
Pro
TGG
[ENA]
¢þ
>WENV182109135
OHIM01024248
[OHIM] human gut metagenome; feces
621
697
+
Pro
TGG
[ENA]
¢þ
>WENV182162220
OHMH01000033
[OHMH] human gut metagenome; feces
54063
54139
+
Pro
TGG
[ENA]
¢þ
>WENV182170466
OHMW01000421
[OHMW] human gut metagenome; feces
15390
15466
+
Pro
TGG
[ENA]
¢þ
>WENV182174372
OHNF01000379
[OHNF] human gut metagenome; feces
15915
15991
+
Pro
TGG
[ENA]
¢þ
>WENV182232295
OHRN01015374
[OHRN] human gut metagenome; feces
671
747
+
Pro
TGG
[ENA]
¢þ
>WENV182251858
OHSW01030761
[OHSW] human gut metagenome; feces
523
599
+
Pro
TGG
[ENA]
¢þ
>WENV182268667
OHUB01004848
[OHUB] human gut metagenome; feces
656
732
+
Pro
TGG
[ENA]
¢þ
>WENV182288838
OHVU01000304
[OHVU] human gut metagenome; feces
15261
15337
+
Pro
TGG
[ENA]
¢þ
>WENV182289289
OHVU01045892
[OHVU] human gut metagenome; feces
346
422
+
Pro
TGG
[ENA]
¢þ
>WENV182295411
OHWF01000484
[OHWF] human gut metagenome; feces
15495
15571
+
Pro
TGG
[ENA]
¢þ
>WENV182335282
OHZR01000293
[OHZR] human gut metagenome; feces
15495
15571
+
Pro
TGG
[ENA]
¢þ
>WENV182339814
OIAD01000545
[OIAD] human gut metagenome; feces
2657
2581
-
Pro
TGG
[ENA]
¢þ
>WENV182365236
OICI01017969
[OICI] human gut metagenome; feces
882
958
+
Pro
TGG
[ENA]
¢þ
>WENV182366451
OICK01026518
[OICK] human gut metagenome; feces
876
800
-
Pro
TGG
[ENA]
¢þ
>WENV182377552
OIDF01035261
[OIDF] human gut metagenome; feces
444
520
+
Pro
TGG
[ENA]
¢þ
>WENV182621847
OJKJ01001376
[OJKJ] metagenome; faeces
5299
5375
+
Pro
TGG
[ENA]
¢þ
>WENV182657000
OJMK01000309
[OJMK] human gut metagenome; feces
14350
14426
+
Pro
TGG
[ENA]
¢þ
>WENV182679494
OJNT01001426
[OJNT] human gut metagenome; human gut
15655
15731
+
Pro
TGG
[ENA]
¢þ
>WENV182688898
OJOC01005643
[OJOC] human gut metagenome; stool sample
1737
1813
+
Pro
TGG
[ENA]
¢þ
>WENV182696161
OJOK01001098
[OJOK] human gut metagenome; human gut
11515
11591
+
Pro
TGG
[ENA]
¢þ
>WENV182713559
OJPG01000894
[OJPG] human gut metagenome; stool sample
11497
11573
+
Pro
TGG
[ENA]
¢þ
>WENV182716360
OJPJ01003398
[OJPJ] human gut metagenome; stool sample
1380
1456
+
Pro
TGG
[ENA]
¢þ
>WENV182753588
OJRC01038617
[OJRC] human gut metagenome; stool sample
115
39
-
Pro
TGG
[ENA]
¢þ
>WENV182758790
OJRI01021507
[OJRI] human gut metagenome; stool sample
226
150
-
Pro
TGG
[ENA]
¢þ
>WENV182884328
OKSC01000174
[OKSC] human gut metagenome; faeces
75468
75544
+
Pro
TGG
[ENA]
¢þ
>WENV182901317
OKSV01000818
[OKSV] human gut metagenome; feces
15802
15878
+
Pro
TGG
[ENA]
¢þ
>WENV183085029
OLJF01001293
[OLJF] metagenome; faeces
15487
15563
+
Pro
TGG
[ENA]
¢þ
>WENV183257582
OLRM01000805
[OLRM] human gut metagenome; faeces
15521
15597
+
Pro
TGG
[ENA]
¢þ
>WENV183263012
OLRQ01029524
[OLRQ] human gut metagenome; faeces
767
843
+
Pro
TGG
[ENA]
¢þ
>WENV183304334
OLSQ01032148
[OLSQ] human gut metagenome; faeces
94
18
-
Pro
TGG
[ENA]
¢þ
>WENV183314473
OLVR01002567
[OLVR] human gut metagenome; faeces
1905
1829
-
Pro
TGG
[ENA]
¢þ
>WENV183327806
OLWA01002052
[OLWA] human gut metagenome; faeces
16012
16088
+
Pro
TGG
[ENA]
¢þ
>WENV183349279
OLWW01000079
[OLWW] human gut metagenome; feces
58319
58243
-
Pro
TGG
[ENA]
¢þ
>WENV183477269
OMFC01000429
[OMFC] human gut metagenome; feces
13354
13278
-
Pro
TGG
[ENA]
¢þ
>WENV183491971
OMGH01001192
[OMGH] human gut metagenome; human gut
1529
1453
-
Pro
TGG
[ENA]
¢þ
>WENV183658084
OQWM01000232
[OQWM] human gut metagenome; human gut
19442
19518
+
Pro
TGG
[ENA]
¢þ
>WENV183775464
PPYF01066281
[PPYF] human gut metagenome; stool from patient with Crohn's disease
632
556
-
Pro
TGG
[ENA]
¢þ
>WENV183779110
PPYF01130077
[PPYF] human gut metagenome; stool from patient with Crohn's disease
431
355
-
Pro
TGG
[ENA]
¢þ
>WENV183787167
PPYF01314452
[PPYF] human gut metagenome; stool from patient with Crohn's disease
232
156
-
Pro
TGG
[ENA]
¢þ
>WENV170637404
JFBN01321167
[JFBN] chicken gut metagenome; ceca of Broiler chicken
53
129
+
Pro
TGG
[ENA]
¢þ
>C181115558
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
2763429
2763505
+
Pro
TGG
-
¡û
>C191031561
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
2728547
2728623
+
Pro
TGG
-
¡û
>C191031616
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
2854030
2854106
+
Pro
TGG
-
¡û
>C191072227
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
2763425
2763501
+
Pro
TGG
-
¡û
>W141732592
JNKE01000021
Bacillota
Ruminococcus flavefaciens MC2020 [JNKE]
81317
81241
-
Pro
TGG
[ENA]
¡û
>W141779634
JOOA01000001
Bacillota
Ruminococcus sp. HUN007 [JOOA]
84338
84265
-
Pro
TGG
[ENA]
¡û
>W141779667
JOOA01000002
Bacillota
Ruminococcus sp. HUN007 [JOOA]
2043679
2043606
-
Pro
TGG
[ENA]
¡û
>W1910228887
FNWA01000006
Bacillota
Ruminococcaceae bacterium Marseille-P2935 [FNWA]
202609
202533
-
Pro
TGG
[ENA]
¡û
>W1910373819
FUHT01000002
Bacillota
Massiliimalia massiliensis Marseille-P2963 [FUHT]
627798
627722
-
Pro
TGG
[ENA]
¡û
>W1910504058
FYDD01000004
Bacillota
Massiliimalia timonensis Marseille-P3753 [FYDD]
92309
92385
+
Pro
TGG
[ENA]
¡û
>W1910545368
FZLO01000002
Bacillota
Scatolibacter rhodanostii Marseille-P3890 [FZLO]
471597
471673
+
Pro
TGG
[ENA]
¡û
>W1810864443
QTWC01000004
Bacillota
Ruminococcus sp. AF26-25AA [QTWC]
355350
355426
+
Pro
TGG
[ENA]
¡û
>C151102779
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
371786
371710
-
Pro
TGG
[Ensembl]
¡û
>W1510061289
CCYH01000004
Bacillota
Candidatus Soleaferrea massiliensis massiliensis AP7 [CCYH]
96349
96425
+
Pro
TGG
[ENA]
¡û
>W10115281
ADJQ01000003
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
8499
8575
+
Pro
TGG
[ENA]
¡û
>C11108754
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
2762823
2762899
+
Pro
TGG
[Ensembl]
¡û
>W11118867
ADJQ01000003
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
8499
8575
+
Pro
TGG
[ENA]
¡û
>W1610947759
LVAK01000137
Bacillota
Clostridiales bacterium Firm_05 [LVAK]
2506
2582
+
Pro
TGG
[ENA]
¡û
>W1610947794
LVAL01000049
Bacillota
Clostridiales bacterium Firm_06 [LVAL]
92239
92163
-
Pro
TGG
[ENA]
¡û
>W1710543201
FNZT01000010
Bacillota
Ruminococcus flavefaciens [FNZT]
194130
194054
-
Pro
TGG
[ENA]
¡û
>W1710580983
FPJT01000020
Bacillota
Ruminococcus flavefaciens [FPJT]
50124
50200
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK