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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18413 (25 seq.)
>W131159451
AQVB01000007
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
78404
78314
-
Ser
TGA
[ENA]
¡û
>W1711116089
LUAS01000111
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
37416
37506
+
Ser
TGA
[ENA]
¡û
>W1711185188
LWNE01000116
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
45536
45626
+
Ser
TGA
[ENA]
¡û
>W131169108
AREM01000013
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
57217
57307
+
Ser
TGA
[ENA]
¡û
>W141194177
AYSV01000004
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
29904
29994
+
Ser
TGA
[ENA]
¡û
>WENV170726150
LSQX01369038
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
20764
20854
+
Ser
TGA
[ENA]
¢þ
>C181049094
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
1312302
1312212
-
Ser
TGA
-
¡û
>C181049959
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
1295481
1295391
-
Ser
TGA
-
¡û
>C181049996
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
1378432
1378342
-
Ser
TGA
-
¡û
>C181050033
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
1278608
1278518
-
Ser
TGA
-
¡û
>C181050115
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
1332431
1332341
-
Ser
TGA
-
¡û
>C181152594
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
1948749
1948659
-
Ser
TGA
-
¡û
>C191208082
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
1340888
1340798
-
Ser
TGA
-
¡û
>W141560354
JHXN01000002
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
135877
135967
+
Ser
TGA
[ENA]
¡û
>W141562677
JHZJ01000004
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
128955
128865
-
Ser
TGA
[ENA]
¡û
>W1910225820
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
310472
310382
-
Ser
TGA
[ENA]
¡û
>W1911595521
PNGK01000002
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
37788
37878
+
Ser
TGA
[ENA]
¡û
>W1810701957
QMFX01000002
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
158615
158705
+
Ser
TGA
[ENA]
¡û
>W1511350693
JRMO01000002
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
253895
253805
-
Ser
TGA
[ENA]
¡û
>W1511351550
JRNI01000058
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
1803
1713
-
Ser
TGA
[ENA]
¡û
>C11122633
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
288590
288500
-
Ser
TGA
[Ensembl]
¡û
>W1511458947
JVJW01000088
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
11059
11149
+
Ser
TGA
[ENA]
¡û
>W1511461243
JVMH01000082
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
11059
11149
+
Ser
TGA
[ENA]
¡û
>C121004853
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
1291957
1291867
-
Ser
TGA
[Ensembl]
¡û
>C121009945
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
1371496
1371406
-
Ser
TGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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