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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184217 (60 seq.)
>W1711009037
LQQL01000216
Bacillota
Weissella sp. DD23 [LQQL]
2446
2520
+
Arg
TCT
[ENA]
¡û
>W1711168469
LVYB01000008
Bacillota
Weissella cibaria [LVYB]
4384
4310
-
Arg
TCT
[ENA]
¡û
>W1711572616
MNBZ01000023
Bacillota
Weissella confusa [MNBZ]
48309
48236
-
Arg
TCT
[ENA]
¡û
>W1711999908
NDXJ01000011
Bacillota
Weissella cibaria [NDXJ]
97828
97902
+
Arg
TCT
[ENA]
¡û
>C171026205
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
977324
977398
+
Arg
TCT
-
¡û
>C171029783
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
516682
516756
+
Arg
TCT
-
¡û
>C171029869
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
527167
527241
+
Arg
TCT
-
¡û
>C171030953
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
1644198
1644121
-
Arg
TCT
-
¡û
>WENV181515736
OGGW01018045
[OGGW] metagenome; Human gut stool
1141
1066
-
Arg
TCT
[ENA]
¢þ
>W141240384
CAGH01000018
Bacillota
Weissella confusa LBAE C39-2 [CAGH]
5555
5480
-
Arg
TCT
[ENA]
¡û
>WENV182610898
OJJW01001971
[OJJW] metagenome; faeces
1765
1840
+
Arg
TCT
[ENA]
¢þ
>WENV183789119
PPYF01381428
[PPYF] human gut metagenome; stool from patient with Crohn's disease
864
939
+
Arg
TCT
[ENA]
¢þ
>WENV170659760
JXWR01076960
[JXWR] soil metagenome; rice field; ambient CO2
268
343
+
Arg
TCT
[ENA]
¢þ
>C181047673
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
2054517
2054443
-
Arg
TCT
-
¡û
>C181069773
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
1212407
1212333
-
Arg
TCT
-
¡û
>C181082758
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
198396
198471
+
Arg
TCT
-
¡û
>C181152856
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
2123366
2123441
+
Arg
TCT
-
¡û
>C191051615
CP027563
Bacillota
Weissella confusa VTT E-133279 [CP027563]
462584
462659
+
Arg
TCT
-
¡û
>C191051698
CP027565
Bacillota
Weissella confusa VTT E-90392 [CP027565]
453920
453995
+
Arg
TCT
-
¡û
>C191137885
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
1908173
1908099
-
Arg
TCT
-
¡û
>C191188483
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
970595
970521
-
Arg
TCT
-
¡û
>W09127181
ACKU01000005
Bacillota
Weissella paramesenteroides ATCC 33313 [ACKU]
89780
89705
-
Arg
TCT
[ENA]
¡û
>W1910177868
BJEC01000005
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
116280
116355
+
Arg
TCT
[ENA]
¡û
>W1910178053
BJEF01000001
Bacillota
Weissella cibaria JCM 12495 [BJEF]
189214
189140
-
Arg
TCT
[ENA]
¡û
>W1910401470
FUWE01000033
Bacillota
Weissella confusa AB3E41 [FUWE]
10084
10009
-
Arg
TCT
[ENA]
¡û
>W1910638448
LRRC01000015
Bacillota
Weissella cibaria 110 [LRRC]
168528
168454
-
Arg
TCT
[ENA]
¡û
>W1911634678
PVRY01000006
Bacillota
Weissella confusa CCUG 61560 [PVRY]
61544
61619
+
Arg
TCT
[ENA]
¡û
>W1911634754
PVRZ01000004
Bacillota
Weissella confusa CCUG 51220 [PVRZ]
59332
59407
+
Arg
TCT
[ENA]
¡û
>W1911634833
PVSA01000006
Bacillota
Weissella confusa CCUG 39518 [PVSA]
63431
63506
+
Arg
TCT
[ENA]
¡û
>W1911634909
PVSB01000005
Bacillota
Weissella confusa CCUG 37938 [PVSB]
74787
74862
+
Arg
TCT
[ENA]
¡û
>W1911634985
PVSC01000003
Bacillota
Weissella confusa CCUG 36556 [PVSC]
56769
56844
+
Arg
TCT
[ENA]
¡û
>W1911635060
PVSD01000003
Bacillota
Weissella confusa CCUG 30969 [PVSD]
215968
216043
+
Arg
TCT
[ENA]
¡û
>W1911635142
PVSE01000007
Bacillota
Weissella confusa F71 [PVSE]
56734
56809
+
Arg
TCT
[ENA]
¡û
>W1911635216
PVSF01000004
Bacillota
Weissella confusa EJ61 [PVSF]
34304
34379
+
Arg
TCT
[ENA]
¡û
>W1911635296
PVSG01000003
Bacillota
Weissella confusa EJ52 [PVSG]
56733
56808
+
Arg
TCT
[ENA]
¡û
>W1911635374
PVSH01000007
Bacillota
Weissella confusa EJ12 [PVSH]
48216
48291
+
Arg
TCT
[ENA]
¡û
>W1911635451
PVSI01000007
Bacillota
Weissella confusa VTT E-163496 [PVSI]
74898
74973
+
Arg
TCT
[ENA]
¡û
>W1911635525
PVSJ01000001
Bacillota
Weissella confusa VTT E-153460 [PVSJ]
478326
478401
+
Arg
TCT
[ENA]
¡û
>W1911635609
PVSK01000006
Bacillota
Weissella confusa VTT E-153457 [PVSK]
28360
28435
+
Arg
TCT
[ENA]
¡û
>W1911635681
PVSL01000001
Bacillota
Weissella confusa VTT E-143403 [PVSL]
478326
478401
+
Arg
TCT
[ENA]
¡û
>W1911635764
PVSM01000003
Bacillota
Weissella confusa VTT E-072748 [PVSM]
28130
28205
+
Arg
TCT
[ENA]
¡û
>W1911635843
PVSN01000014
Bacillota
Weissella confusa VTT E-062653 [PVSN]
64968
65043
+
Arg
TCT
[ENA]
¡û
>W1911635921
PVSO01000014
Bacillota
Weissella confusa VTT E-95616 [PVSO]
42117
42192
+
Arg
TCT
[ENA]
¡û
>W1911635999
PVSP01000003
Bacillota
Weissella confusa VTT E-90393 [PVSP]
56735
56810
+
Arg
TCT
[ENA]
¡û
>W1810576403
QENM01000006
Bacillota
Weissella confusa 32 [QENM]
33849
33924
+
Arg
TCT
[ENA]
¡û
>W1810784757
QRAY01000001
Bacillota
Weissella thailandensis KCTC 3751 [QRAY]
116705
116780
+
Arg
TCT
[ENA]
¡û
>W1810816515
QSBT01000007
Bacillota
Weissella confusa AF03-13 [QSBT]
92541
92466
-
Arg
TCT
[ENA]
¡û
>W1810828828
QSKQ01000002
Bacillota
Weissella cibaria AM27-24 [QSKQ]
183872
183798
-
Arg
TCT
[ENA]
¡û
>W1810828882
QSKR01000002
Bacillota
Weissella cibaria AM27-22LB [QSKR]
233507
233581
+
Arg
TCT
[ENA]
¡û
>W1810842372
QSVX01000009
Bacillota
Weissella cibaria OF06-4 [QSVX]
130016
130090
+
Arg
TCT
[ENA]
¡û
>W1510500344
CRHY01000030
Bacillota
Streptococcus pneumoniae SMRU1312 [CRHY]
44537
44612
+
Arg
TCT
[ENA]
¡û
>W1511478986
JWHT01000013
Bacillota
Weissella cibaria AB3b [JWHT]
6272
6346
+
Arg
TCT
[ENA]
¡û
>W1511479071
JWHU01000012
Bacillota
Weissella cibaria MG1 [JWHU]
19054
19128
+
Arg
TCT
[ENA]
¡û
>W1511479101
JWHV01000002
Bacillota
Weissella cibaria ff3PR [JWHV]
180415
180341
-
Arg
TCT
[ENA]
¡û
>W11139988
AEKT01000023
Bacillota
Weissella cibaria KACC 11862 [AEKT]
119570
119644
+
Arg
TCT
[ENA]
¡û
>C161046756
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
963868
963942
+
Arg
TCT
[Ensembl]
¡û
>W1610528130
JQAY01000004
Bacillota
Weissella confusa [JQAY]
130522
130447
-
Arg
TCT
[ENA]
¡û
>W1610857557
LQQL01000216
Bacillota
Weissella sp. DD23 [LQQL]
2446
2520
+
Arg
TCT
[ENA]
¡û
>W1610978321
LVYB01000008
Bacillota
Weissella cibaria [LVYB]
4384
4310
-
Arg
TCT
[ENA]
¡û
>W1710629720
JQAY01000004
Bacillota
Weissella confusa [JQAY]
130522
130447
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK