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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184276 (52 seq.)
>W1711089368
LSZO01000170
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
1636
1560
-
Arg
ACG
[ENA]
¡û
>W1711089369
LSZO01000170
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
1516
1440
-
Arg
ACG
[ENA]
¡û
>W1711212824
LXJQ01000005
Gammaproteobacteria
Pseudomonas sp. 1D4 [LXJQ]
49823
49747
-
Arg
ACG
[ENA]
¡û
>W1711212825
LXJQ01000005
Gammaproteobacteria
Pseudomonas sp. 1D4 [LXJQ]
49675
49599
-
Arg
ACG
[ENA]
¡û
>W1711256232
LYSP01000004
Gammaproteobacteria
Pseudomonas sp. ENNP23 [LYSP]
55223
55147
-
Arg
ACG
[ENA]
¡û
>W1711256233
LYSP01000004
Gammaproteobacteria
Pseudomonas sp. ENNP23 [LYSP]
55075
54999
-
Arg
ACG
[ENA]
¡û
>W1711361343
MDLC01000049
Gammaproteobacteria
Candidatus Endobugula sertula [MDLC]
16976
16900
-
Arg
ACG
[ENA]
¡û
>C171044830
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
4595370
4595294
-
Arg
ACG
-
¡û
>C171044831
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
4595223
4595147
-
Arg
ACG
-
¡û
>W131225695
AUDU01000023
Gammaproteobacteria
Stutzerimonas azotifigens DSM 17556 [AUDU]
61588
61512
-
Arg
ACG
[ENA]
¡û
>W131225696
AUDU01000023
Gammaproteobacteria
Stutzerimonas azotifigens DSM 17556 [AUDU]
61442
61366
-
Arg
ACG
[ENA]
¡û
>W131155999
AQPA01000074
Gammaproteobacteria
Pseudomonas thermotolerans DSM 14292 [AQPA]
122458
122534
+
Arg
ACG
[ENA]
¡û
>W131156000
AQPA01000074
Gammaproteobacteria
Pseudomonas thermotolerans DSM 14292 [AQPA]
122613
122689
+
Arg
ACG
[ENA]
¡û
>WENV180044257
MAVB01000384
[MAVB] viral metagenome; DNA from tracheal sample collected at farm Panchmahal, Godhra
428
352
-
Arg
ACG
[ENA]
¢þ
>WENV180293910
OBIY01004029
[OBIY] beach sand metagenome; beach sand
280
204
-
Arg
ACG
[ENA]
¢þ
>WENV180296178
OBJA01000031
[OBJA] soil metagenome; sediment, water from around vicinity
75846
75770
-
Arg
ACG
[ENA]
¢þ
>WENV180385480
OBPA01004997
[OBPA] marine metagenome; Sterile flask
575
499
-
Arg
ACG
[ENA]
¢þ
>WENV181126243
OEFV01025436
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
441
517
+
Arg
ACG
[ENA]
¢þ
>WENV181731749
OGQD01002973
[OGQD] human gut metagenome; faeces
2304
2380
+
Arg
ACG
[ENA]
¢þ
>WENV181731750
OGQD01002973
[OGQD] human gut metagenome; faeces
2453
2529
+
Arg
ACG
[ENA]
¢þ
>WENV181844789
OGVW01030922
[OGVW] freshwater metagenome; freshwater
498
574
+
Arg
ACG
[ENA]
¢þ
>W141216323
AZUT01000020
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
19
95
+
Arg
ACG
[ENA]
¡û
>W141216330
AZUT01000023
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
75378
75454
+
Arg
ACG
[ENA]
¡û
>WENV182547931
OJBU01002411
[OJBU] seawater metagenome; Sea water
1698
1622
-
Arg
ACG
[ENA]
¢þ
>WENV182551846
OJCJ01000228
[OJCJ] seawater metagenome; Sea water
7442
7518
+
Arg
ACG
[ENA]
¢þ
>WENV182581726
OJGY01000502
[OJGY] seawater metagenome; Sea water
247
171
-
Arg
ACG
[ENA]
¢þ
>WENV183522128
OMOM01000146
[OMOM] seawater metagenome; Sea water
46335
46259
-
Arg
ACG
[ENA]
¢þ
>WENV170779560
LZQQ01000009
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
1921
1997
+
Arg
ACG
[ENA]
¢þ
>WENV170779561
LZQQ01000009
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
2067
2143
+
Arg
ACG
[ENA]
¢þ
>W1911493298
OBEM01000004
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I9 [OBEM]
325664
325588
-
Arg
ACG
[ENA]
¡û
>W1911493299
OBEM01000004
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I9 [OBEM]
325513
325437
-
Arg
ACG
[ENA]
¡û
>W1810378798
PXJI01000033
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
35185
35109
-
Arg
ACG
[ENA]
¡û
>W1810378799
PXJI01000033
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
35037
34961
-
Arg
ACG
[ENA]
¡û
>W1810579336
QEQL01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I12 [QEQL]
377294
377370
+
Arg
ACG
[ENA]
¡û
>W1810579337
QEQL01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I12 [QEQL]
377445
377521
+
Arg
ACG
[ENA]
¡û
>W1810579561
QEQP01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I10 [QEQP]
326162
326086
-
Arg
ACG
[ENA]
¡û
>W1810579562
QEQP01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I10 [QEQP]
326011
325935
-
Arg
ACG
[ENA]
¡û
>W1810579674
QEQR01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I11 [QEQR]
377110
377186
+
Arg
ACG
[ENA]
¡û
>W1810579675
QEQR01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I11 [QEQR]
377261
377337
+
Arg
ACG
[ENA]
¡û
>C151001286
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
4650463
4650387
-
Arg
ACG
[Ensembl]
¡û
>C151001287
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
4650315
4650239
-
Arg
ACG
[Ensembl]
¡û
>W1511525062
JYFT01000075
Gammaproteobacteria
Pseudomonas sp. FeS53a [JYFT]
81323
81247
-
Arg
ACG
[ENA]
¡û
>W1511525063
JYFT01000075
Gammaproteobacteria
Pseudomonas sp. FeS53a [JYFT]
81175
81099
-
Arg
ACG
[ENA]
¡û
>W1511530344
JYKO01000002
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
486738
486662
-
Arg
ACG
[ENA]
¡û
>W1511564158
LADM01000112
Gammaproteobacteria
Gammaproteobacteria bacterium BRH_c0 [LADM]
37202
37126
-
Arg
ACG
[ENA]
¡û
>C131014919
CP005094
Gammaproteobacteria
Azotobacter vinelandii CA [CP005094]
3517602
3517526
-
Arg
ACG
[Ensembl]
¡û
>W1610923746
LSZO01000170
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
1636
1560
-
Arg
ACG
[ENA]
¡û
>W1610923747
LSZO01000170
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
1516
1440
-
Arg
ACG
[ENA]
¡û
>W1710555593
FOJP01000008
Gammaproteobacteria
Pseudomonas otitidis [FOJP]
120051
120127
+
Arg
ACG
[ENA]
¡û
>W1710555594
FOJP01000008
Gammaproteobacteria
Pseudomonas otitidis [FOJP]
120199
120275
+
Arg
ACG
[ENA]
¡û
>W1710567633
FOSX01000012
Gammaproteobacteria
Azotobacter beijerinckii [FOSX]
24119
24195
+
Arg
ACG
[ENA]
¡û
>W1710567634
FOSX01000012
Gammaproteobacteria
Azotobacter beijerinckii [FOSX]
24260
24336
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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