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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184411 (19 seq.)
>W131242084
CAAG010000001
Actinomycetota
Tropheryma whipplei str. Dig15 [CAAG]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131242126
CAAH010000001
Actinomycetota
Tropheryma whipplei str. Endo32 [CAAH]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131242168
CAAO010000001
Actinomycetota
Tropheryma whipplei str. Slow2 [CAAO]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131249880
CAUD01000001
Actinomycetota
Tropheryma whipplei str. Neuro1 [CAUD]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131249964
CAUF01000001
Actinomycetota
Tropheryma whipplei str. Art1 [CAUF]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250357
CAUP010000001
Actinomycetota
Tropheryma whipplei str. Dig7 [CAUP]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250399
CAUQ010000001
Actinomycetota
Tropheryma whipplei str. Dig10 [CAUQ]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250441
CAUR010000001
Actinomycetota
Tropheryma whipplei str. Neuro14 [CAUR]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250483
CAUS010000001
Actinomycetota
Tropheryma whipplei str. Endo27 [CAUS]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250525
CAUT010000001
Actinomycetota
Tropheryma whipplei str. Sali28 [CAUT]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250567
CAUU010000001
Actinomycetota
Tropheryma whipplei str. Art29 [CAUU]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250608
CAUV010000001
Actinomycetota
Tropheryma whipplei str. Pneumo30 [CAUV]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250650
CAUW010000001
Actinomycetota
Tropheryma whipplei str. DigADP25 [CAUW]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250692
CAUX010000001
Actinomycetota
Tropheryma whipplei str. Neuro20 [CAUX]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250734
CAUY010000001
Actinomycetota
Tropheryma whipplei str. Dig9 [CAUY]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250775
CAVA010000001
Actinomycetota
Tropheryma whipplei str. DigMusc17 [CAVA]
9365
9441
+
Ala
TGC
[ENA]
¡û
>W131250817
CAVB010000001
Actinomycetota
Tropheryma whipplei str. Bcu26 [CAVB]
9365
9441
+
Ala
TGC
[ENA]
¡û
>C025966
BX072543
Actinomycetota
Tropheryma whipplei [BX072543]
9365
9441
+
Ala
TGC
[Ensembl]
¡û
>C026013
AE014184
Actinomycetota
Tropheryma whipplei str. Twist [AE014184]
9365
9441
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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