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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184421 (47 seq.)
>C171055554
CP017038
Bacteroidota
Tannerella serpentiformis W11667 [CP017038]
2525572
2525646
+
His
GTG
-
¡û
>WENV180010210
FLSC01410510
[FLSC] metagenome; saliva
298
372
+
His
GTG
[ENA]
¢þ
>WENV180725195
ODGR01016518
[ODGR] human metagenome; G_DNA_Tongue dorsum
1037
1111
+
His
GTG
[ENA]
¢þ
>WENV180729036
ODGU01166501
[ODGU] human metagenome; G_DNA_Supragingival plaque
374
300
-
His
GTG
[ENA]
¢þ
>WENV180768600
ODIG01011242
[ODIG] human metagenome; G_DNA_Tongue dorsum
1198
1124
-
His
GTG
[ENA]
¢þ
>WENV180805119
ODJG01064030
[ODJG] human metagenome; G_DNA_Supragingival plaque
470
544
+
His
GTG
[ENA]
¢þ
>WENV180809335
ODJK01012444
[ODJK] human metagenome; G_DNA_Subgingival plaque
406
332
-
His
GTG
[ENA]
¢þ
>WENV180813459
ODJO01000792
[ODJO] human metagenome; G_DNA_Supragingival plaque
21232
21306
+
His
GTG
[ENA]
¢þ
>WENV180815821
ODJP01001933
[ODJP] human metagenome; G_DNA_Tongue dorsum
312
238
-
His
GTG
[ENA]
¢þ
>WENV180835827
ODKE01014918
[ODKE] human metagenome; G_DNA_Supragingival plaque
1754
1828
+
His
GTG
[ENA]
¢þ
>WENV180847248
ODKT01056154
[ODKT] human metagenome; G_DNA_Supragingival plaque
285
211
-
His
GTG
[ENA]
¢þ
>WENV180860038
ODLD01013475
[ODLD] human metagenome; G_DNA_Supragingival plaque
155
81
-
His
GTG
[ENA]
¢þ
>WENV180861944
ODLE01020388
[ODLE] human metagenome; G_DNA_Tongue dorsum
324
250
-
His
GTG
[ENA]
¢þ
>WENV180882608
ODMC01000208
[ODMC] human metagenome; G_DNA_Tongue dorsum
40070
40144
+
His
GTG
[ENA]
¢þ
>WENV180900015
ODOJ01000260
[ODOJ] human metagenome; G_DNA_Tongue dorsum
11448
11522
+
His
GTG
[ENA]
¢þ
>WENV180922205
ODTJ01001869
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1096
1022
-
His
GTG
[ENA]
¢þ
>WENV180931652
ODTP01007310
[ODTP] human metagenome; G_DNA_Tongue dorsum
309
235
-
His
GTG
[ENA]
¢þ
>WENV180939632
ODTX01060151
[ODTX] human metagenome; G_DNA_Supragingival plaque
122
48
-
His
GTG
[ENA]
¢þ
>WENV180944068
ODUC01006997
[ODUC] human metagenome; G_DNA_Supragingival plaque
4340
4266
-
His
GTG
[ENA]
¢þ
>WENV180964326
ODUO01001091
[ODUO] human metagenome; G_DNA_Supragingival plaque
338
264
-
His
GTG
[ENA]
¢þ
>WENV180968263
ODUT01015978
[ODUT] human metagenome; G_DNA_Tongue dorsum
1785
1860
+
His
GTG
[ENA]
¢þ
>WENV180985738
ODVJ01014290
[ODVJ] human metagenome; G_DNA_Tongue dorsum
326
252
-
His
GTG
[ENA]
¢þ
>WENV180998307
ODVT01000158
[ODVT] human metagenome; G_DNA_Buccal mucosa
11599
11673
+
His
GTG
[ENA]
¢þ
>WENV181002828
ODVX01001988
[ODVX] human metagenome; G_DNA_Supragingival plaque
11506
11580
+
His
GTG
[ENA]
¢þ
>WENV181009219
ODWE01040291
[ODWE] human metagenome; G_DNA_Supragingival plaque
596
522
-
His
GTG
[ENA]
¢þ
>WENV181018937
ODWU01000214
[ODWU] human metagenome; G_DNA_Supragingival plaque
36383
36309
-
His
GTG
[ENA]
¢þ
>WENV181034118
ODXN01074648
[ODXN] human metagenome; G_DNA_Tongue dorsum
91
17
-
His
GTG
[ENA]
¢þ
>WENV181038231
ODXQ01000686
[ODXQ] human metagenome; G_DNA_Tongue dorsum
940
866
-
His
GTG
[ENA]
¢þ
>WENV181043168
ODXU01060763
[ODXU] human metagenome; G_DNA_Buccal mucosa
132
206
+
His
GTG
[ENA]
¢þ
>WENV181064339
ODYP01021624
[ODYP] human metagenome; G_DNA_Supragingival plaque
267
193
-
His
GTG
[ENA]
¢þ
>WENV181075874
OEAP01000547
[OEAP] human metagenome; G_DNA_Supragingival plaque
13167
13093
-
His
GTG
[ENA]
¢þ
>WENV181079287
OEAS01004175
[OEAS] human metagenome; G_DNA_Supragingival plaque
7126
7200
+
His
GTG
[ENA]
¢þ
>WENV181094939
OEBY01001994
[OEBY] human metagenome; G_DNA_Tongue dorsum
311
237
-
His
GTG
[ENA]
¢þ
>WENV181097568
OECA01013984
[OECA] human metagenome; G_DNA_Tongue dorsum
385
311
-
His
GTG
[ENA]
¢þ
>WENV181150186
OEHW01000781
[OEHW] human metagenome; G_DNA_Tongue dorsum
11378
11452
+
His
GTG
[ENA]
¢þ
>WENV181153568
OEIA01144522
[OEIA] human metagenome; G_DNA_Supragingival plaque
171
97
-
His
GTG
[ENA]
¢þ
>WENV181160959
OEIK01073586
[OEIK] human metagenome; G_DNA_Supragingival plaque
170
96
-
His
GTG
[ENA]
¢þ
>W141195577
AYUF01000425
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 2 [AYUF]
323
249
-
His
GTG
[ENA]
¡û
>W141200622
AYYC01000689
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 5 [AYYC]
44991
44917
-
His
GTG
[ENA]
¡û
>W141200648
AYYD01000986
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 6/7/9 [AYYD]
11578
11652
+
His
GTG
[ENA]
¡û
>W141200717
AYYE01001259
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 1/3 [AYYE]
33596
33522
-
His
GTG
[ENA]
¡û
>W141200748
AYYF01001551
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 8/11 [AYYF]
600
526
-
His
GTG
[ENA]
¡û
>WENV182049198
OHEC01000084
[OHEC] human gut metagenome; feces
676
752
+
His
GTG
[ENA]
¢þ
>WENV182098285
OHHQ01000084
[OHHQ] human gut metagenome; feces
2080
2155
+
His
GTG
[ENA]
¢þ
>WENV182106960
OHIK01000060
[OHIK] human gut metagenome; feces
20431
20356
-
His
GTG
[ENA]
¢þ
>WENV182122994
OHJP01000307
[OHJP] human gut metagenome; feces
2488
2563
+
His
GTG
[ENA]
¢þ
>WENV183508759
OMHF01002405
[OMHF] human oral metagenome; human oral
491
417
-
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK