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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184440 (51 seq.)
>W1710802242
LJXT01000086
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
14278
14204
-
Asn
GTT
[ENA]
¡û
>W1711043778
LRML01000001
Bacteroidota
Rufibacter roseus [LRML]
85681
85605
-
Asn
GTT
[ENA]
¡û
>W1711043833
LRMM01000031
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
24500
24426
-
Asn
GTT
[ENA]
¡û
>W131053374
AMZY02000010
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
258941
258865
-
Asn
GTT
[ENA]
¡û
>W131165378
ARBN01000001
Bacteroidota
Cytophaga aurantiaca DSM 3654 [ARBN]
57014
57088
+
Asn
GTT
[ENA]
¡û
>W131223098
AUBU01000005
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
168441
168367
-
Asn
GTT
[ENA]
¡û
>W131223139
AUBV01000006
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
317117
317043
-
Asn
GTT
[ENA]
¡û
>W131223201
AUBX01000010
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
530494
530568
+
Asn
GTT
[ENA]
¡û
>W1711707959
MSSX01000011
Bacteroidota
Algoriphagus faecimaris [MSSX]
116036
116112
+
Asn
GTT
[ENA]
¡û
>C005869
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
63435
63359
-
Asn
GTT
[Ensembl]
¡û
>WENV180021031
FTDL01000045
[FTDL] metagenome; soil
6671
6745
+
Asn
GTT
[ENA]
¢þ
>W141043732
AMGM01000092
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
12499
12573
+
Asn
GTT
[ENA]
¡û
>WENV180693356
OCZS011178206
[OCZS] soil metagenome; soil
293
219
-
Asn
GTT
[ENA]
¢þ
>WENV181233991
OFET01000635
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
3440
3514
+
Asn
GTT
[ENA]
¢þ
>WENV181234786
OFEU01008641
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
152
226
+
Asn
GTT
[ENA]
¢þ
>W141151943
AXBK01000009
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
356315
356391
+
Asn
GTT
[ENA]
¡û
>WENV181848713
OGVZ01019346
[OGVZ] freshwater metagenome; freshwater
105
31
-
Asn
GTT
[ENA]
¢þ
>WENV181854950
OGWK01041838
[OGWK] freshwater metagenome; freshwater
214
140
-
Asn
GTT
[ENA]
¢þ
>W141278904
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
1773504
1773578
+
Asn
GTT
[ENA]
¡û
>WENV170192579
CEPF01026067
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
726
650
-
Asn
GTT
[ENA]
¢þ
>WENV170193031
CEPG01061996
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1744
1668
-
Asn
GTT
[ENA]
¢þ
>WENV170193881
CEPI01058985
[CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
665
589
-
Asn
GTT
[ENA]
¢þ
>WENV170409031
CEUI01140079
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
660
736
+
Asn
GTT
[ENA]
¢þ
>WENV170639152
JFJP01001177
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
13370
13446
+
Asn
GTT
[ENA]
¢þ
>WENV170652012
JRYG01040220
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1359
1285
-
Asn
GTT
[ENA]
¢þ
>WENV170722913
LSQX01248222
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
18290
18214
-
Asn
GTT
[ENA]
¢þ
>WENV170829000
MDSZ01000938
[MDSZ] marine metagenome; seawater
2742
2666
-
Asn
GTT
[ENA]
¢þ
>WENV170993368
MWWB01278318
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
71
145
+
Asn
GTT
[ENA]
¢þ
>W1910237077
FPJX01000004
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
276058
275983
-
Asn
GTT
[ENA]
¡û
>W1910932898
NIUC01000003
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
406806
406730
-
Asn
GTT
[ENA]
¡û
>W1911775213
QXML01000002
Bacteroidota
Algoriphagus lacus N3 [QXML]
351465
351391
-
Asn
GTT
[ENA]
¡û
>W1810400066
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
5409287
5409213
-
Asn
GTT
[ENA]
¡û
>W1810400588
PYGF01000006
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
93642
93568
-
Asn
GTT
[ENA]
¡û
>W1810483295
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
353268
353194
-
Asn
GTT
[ENA]
¡û
>W1810533374
QCZK01000003
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
194633
194707
+
Asn
GTT
[ENA]
¡û
>C151071882
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
3803101
3803175
+
Asn
GTT
[Ensembl]
¡û
>C161028435
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
2027919
2027845
-
Asn
GTT
[Ensembl]
¡û
>C161043237
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
1486663
1486737
+
Asn
GTT
[Ensembl]
¡û
>C161046179
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
3534818
3534892
+
Asn
GTT
[Ensembl]
¡û
>WENV057907
AACY023310700
Marine microbial communities from Global Ocean Sampling (GOS)
297
375
+
Asn
GTT
[ENA]
>W121064822
AJMQ01000042
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
5747
5671
-
Asn
GTT
[ENA]
¡û
>W121071520
AJYA01000006
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
25481
25405
-
Asn
GTT
[ENA]
¡û
>W1610050109
BBFN01000007
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
123419
123493
+
Asn
GTT
[ENA]
¡û
>W1610666099
LJXT01000086
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
14278
14204
-
Asn
GTT
[ENA]
¡û
>W1610885077
LRML01000001
Bacteroidota
Rufibacter roseus [LRML]
85681
85605
-
Asn
GTT
[ENA]
¡û
>W1610885132
LRMM01000031
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
24500
24426
-
Asn
GTT
[ENA]
¡û
>W1710046508
BBFN01000007
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
123419
123493
+
Asn
GTT
[ENA]
¡û
>W1710513386
FNAC01000012
Bacteroidota
Algoriphagus faecimaris [FNAC]
1933
1857
-
Asn
GTT
[ENA]
¡û
>W1710562648
FOPC01000001
Bacteroidota
Algoriphagus hitonicola [FOPC]
341718
341644
-
Asn
GTT
[ENA]
¡û
>W1710571379
FOVW01000001
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
377135
377059
-
Asn
GTT
[ENA]
¡û
>W1710593733
FRXN01000003
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
458340
458414
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK