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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184448 (14 seq.)
>W1711188837
LWQU01000141
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
55361
55437
+
Arg
ACG
[ENA]
¡û
>C171041992
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
1072882
1072806
-
Arg
ACG
-
¡û
>C171074576
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
732795
732719
-
Arg
ACG
-
¡û
>C171074628
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
742635
742559
-
Arg
ACG
-
¡û
>W131094258
AONQ01000035
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
34212
34136
-
Arg
ACG
[ENA]
¡û
>C009858
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
732850
732774
-
Arg
ACG
[Ensembl]
¡û
>w001867
AAAP01003864
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
20057
20135
+
Arg
ACG
[ENA]
¡û
>WENV170003508
AGTN01362379
[AGTN] bioreactor metagenome; poplar biomass
3172
3096
-
Arg
ACG
[ENA]
¢þ
>W1910498963
FXXN01000022
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
195537
195613
+
Arg
ACG
[ENA]
¡û
>W1910913966
NHRY01000201
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
6528
6452
-
Arg
ACG
[ENA]
¡û
>C151004100
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
739304
739228
-
Arg
ACG
[Ensembl]
¡û
>W1511510915
JXSL01000030
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
518593
518517
-
Arg
ACG
[ENA]
¡û
>C161108367
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
631155
631231
+
Arg
ACG
-
¡û
>W1610990956
LWQU01000141
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
55361
55437
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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