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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184461 (136 seq.)
>W131158408
AQUA01000006
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
53812
53736
-
Trp
CCA
[ENA]
¡û
>W131162581
AQYZ01000021
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
4183
4109
-
Trp
CCA
[ENA]
¡û
>W131162917
AQZH01000019
Actinomycetota
actinobacterium SCGC AAA278-I18 [AQZH]
13832
13908
+
Trp
CCA
[ENA]
¡û
>W131162971
AQZJ01000009
Actinomycetota
actinobacterium SCGC AAA028-A23 [AQZJ]
22453
22377
-
Trp
CCA
[ENA]
¡û
>W131163039
AQZL01000015
Actinomycetota
actinobacterium SCGC AAA023-D18 [AQZL]
4884
4808
-
Trp
CCA
[ENA]
¡û
>WENV180110510
OAPN01000300
[OAPN] marine metagenome; 2011
76
2
-
Trp
CCA
[ENA]
¢þ
>WENV180111772
OAPN01170905
[OAPN] marine metagenome; 2011
156
230
+
Trp
CCA
[ENA]
¢þ
>WENV180113807
OAPR01027776
[OAPR] marine metagenome; seawater
374
300
-
Trp
CCA
[ENA]
¢þ
>WENV180357372
OBNN01005485
[OBNN] marine metagenome; Coastal water
642
568
-
Trp
CCA
[ENA]
¢þ
>WENV180357763
OBNN01095435
[OBNN] marine metagenome; Coastal water
76
2
-
Trp
CCA
[ENA]
¢þ
>WENV180377090
OBON01000334
[OBON] marine metagenome; sea water
76
2
-
Trp
CCA
[ENA]
¢þ
>WENV180377623
OBON01061885
[OBON] marine metagenome; sea water
212
138
-
Trp
CCA
[ENA]
¢þ
>WENV180592097
OCOV01186688
[OCOV] marine metagenome; ENVO:01000301
84
10
-
Trp
CCA
[ENA]
¢þ
>WENV181367373
OFQB01000064
[OFQB] freshwater metagenome; Freshwater Lake
5318
5392
+
Trp
CCA
[ENA]
¢þ
>WENV181367497
OFQB01004193
[OFQB] freshwater metagenome; Freshwater Lake
924
850
-
Trp
CCA
[ENA]
¢þ
>WENV181367612
OFQC01000060
[OFQC] freshwater metagenome; Freshwater Lake
6068
6142
+
Trp
CCA
[ENA]
¢þ
>WENV181367667
OFQC01000649
[OFQC] freshwater metagenome; Freshwater Lake
1896
1822
-
Trp
CCA
[ENA]
¢þ
>WENV181368111
OFQK01000049
[OFQK] freshwater metagenome; Freshwater Lake
8140
8066
-
Trp
CCA
[ENA]
¢þ
>WENV181368300
OFQL01000284
[OFQL] freshwater metagenome; Freshwater Lake
5650
5724
+
Trp
CCA
[ENA]
¢þ
>WENV181368348
OFQL01000980
[OFQL] freshwater metagenome; Freshwater Lake
1829
1903
+
Trp
CCA
[ENA]
¢þ
>WENV181368557
OFQM01000049
[OFQM] freshwater metagenome; Freshwater Lake
699
625
-
Trp
CCA
[ENA]
¢þ
>WENV181368798
OFQN01000667
[OFQN] freshwater metagenome; Freshwater Lake
2944
3018
+
Trp
CCA
[ENA]
¢þ
>WENV181368803
OFQN01000702
[OFQN] freshwater metagenome; Freshwater Lake
3034
3108
+
Trp
CCA
[ENA]
¢þ
>WENV181368828
OFQN01001156
[OFQN] freshwater metagenome; Freshwater Lake
3094
3167
+
Trp
CCA
[ENA]
¢þ
>WENV181369291
OFQP01000117
[OFQP] freshwater metagenome; Freshwater Lake
7463
7389
-
Trp
CCA
[ENA]
¢þ
>WENV181369824
OFQR01000420
[OFQR] freshwater metagenome; Freshwater Lake
3560
3634
+
Trp
CCA
[ENA]
¢þ
>WENV181370176
OFQS01000252
[OFQS] freshwater metagenome; Freshwater Lake
3457
3531
+
Trp
CCA
[ENA]
¢þ
>WENV181370221
OFQS01000833
[OFQS] freshwater metagenome; Freshwater Lake
2530
2456
-
Trp
CCA
[ENA]
¢þ
>WENV181370235
OFQS01000972
[OFQS] freshwater metagenome; Freshwater Lake
74
1
-
Trp
CCA
[ENA]
¢þ
>WENV181370555
OFQT01000186
[OFQT] freshwater metagenome; Freshwater Lake
1735
1661
-
Trp
CCA
[ENA]
¢þ
>WENV181370575
OFQT01000375
[OFQT] freshwater metagenome; Freshwater Lake
1938
2012
+
Trp
CCA
[ENA]
¢þ
>WENV181370696
OFQT01003940
[OFQT] freshwater metagenome; Freshwater Lake
74
1
-
Trp
CCA
[ENA]
¢þ
>WENV181371185
OFQU01047192
[OFQU] wastewater metagenome; Exp Tend CN 90WW
372
298
-
Trp
CCA
[ENA]
¢þ
>WENV181372440
OFQW01067750
[OFQW] wastewater metagenome; Exp Tend NO 90WW
211
285
+
Trp
CCA
[ENA]
¢þ
>WENV181376817
OFRA01000236
[OFRA] wastewater metagenome; Lake Maggiore Verbania
11337
11411
+
Trp
CCA
[ENA]
¢þ
>WENV181377053
OFRA01001706
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1621
1695
+
Trp
CCA
[ENA]
¢þ
>WENV181377175
OFRA01003424
[OFRA] wastewater metagenome; Lake Maggiore Verbania
3416
3342
-
Trp
CCA
[ENA]
¢þ
>WENV181377477
OFRA01012333
[OFRA] wastewater metagenome; Lake Maggiore Verbania
74
1
-
Trp
CCA
[ENA]
¢þ
>WENV181379367
OFRD01000816
[OFRD] wastewater metagenome; Exp Tend CN 100WW
3162
3236
+
Trp
CCA
[ENA]
¢þ
>WENV181379776
OFRD01008136
[OFRD] wastewater metagenome; Exp Tend CN 100WW
74
1
-
Trp
CCA
[ENA]
¢þ
>WENV181381968
OFRF01040040
[OFRF] wastewater metagenome; Exp Tend CN 50WW
492
566
+
Trp
CCA
[ENA]
¢þ
>WENV181384232
OFRH01040732
[OFRH] wastewater metagenome; Exp Tend NO 100WW
504
430
-
Trp
CCA
[ENA]
¢þ
>WENV181384345
OFRI01000237
[OFRI] wastewater metagenome; Exp Tend VB 90WW
11529
11455
-
Trp
CCA
[ENA]
¢þ
>WENV181384525
OFRI01002134
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2
76
+
Trp
CCA
[ENA]
¢þ
>WENV181384898
OFRI01019128
[OFRI] wastewater metagenome; Exp Tend VB 90WW
76
2
-
Trp
CCA
[ENA]
¢þ
>WENV181386177
OFRL01001062
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
4275
4349
+
Trp
CCA
[ENA]
¢þ
>WENV181386219
OFRL01001341
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
6162
6088
-
Trp
CCA
[ENA]
¢þ
>WENV181391288
OFRS01002591
[OFRS] freshwater metagenome; Freshwater Lake
316
390
+
Trp
CCA
[ENA]
¢þ
>WENV181391721
OFRU01000052
[OFRU] freshwater metagenome; Freshwater Lake
2923
2849
-
Trp
CCA
[ENA]
¢þ
>WENV181395707
OFSB01000647
[OFSB] freshwater metagenome; Freshwater Lake
78
4
-
Trp
CCA
[ENA]
¢þ
>WENV181398925
OFSE01004207
[OFSE] wastewater metagenome; Exp Tend VB 50WW
2626
2552
-
Trp
CCA
[ENA]
¢þ
>WENV181400205
OFSF01002372
[OFSF] wastewater metagenome; Exp Tend VB 100WW
3210
3136
-
Trp
CCA
[ENA]
¢þ
>WENV181400239
OFSF01002928
[OFSF] wastewater metagenome; Exp Tend VB 100WW
934
1008
+
Trp
CCA
[ENA]
¢þ
>WENV181400305
OFSF01004325
[OFSF] wastewater metagenome; Exp Tend VB 100WW
74
1
-
Trp
CCA
[ENA]
¢þ
>WENV181836380
OGVJ01005807
[OGVJ] freshwater metagenome; freshwater
899
973
+
Trp
CCA
[ENA]
¢þ
>WENV181838683
OGVN01009825
[OGVN] freshwater metagenome; freshwater
624
698
+
Trp
CCA
[ENA]
¢þ
>WENV181843194
OGVU01002748
[OGVU] freshwater metagenome; freshwater
1616
1542
-
Trp
CCA
[ENA]
¢þ
>WENV181845343
OGVX01001626
[OGVX] freshwater metagenome; freshwater
739
813
+
Trp
CCA
[ENA]
¢þ
>WENV181847807
OGVZ01000154
[OGVZ] freshwater metagenome; freshwater
512
438
-
Trp
CCA
[ENA]
¢þ
>WENV181848340
OGVZ01005633
[OGVZ] freshwater metagenome; freshwater
94
19
-
Trp
CCA
[ENA]
¢þ
>WENV181850824
OGWE01000745
[OGWE] freshwater metagenome; freshwater
309
383
+
Trp
CCA
[ENA]
¢þ
>WENV181853108
OGWH01033797
[OGWH] freshwater metagenome; freshwater
41
115
+
Trp
CCA
[ENA]
¢þ
>WENV181853210
OGWI01000401
[OGWI] freshwater metagenome; freshwater
1921
1847
-
Trp
CCA
[ENA]
¢þ
>WENV181854062
OGWJ01007599
[OGWJ] freshwater metagenome; freshwater
298
224
-
Trp
CCA
[ENA]
¢þ
>WENV181854063
OGWJ01007653
[OGWJ] freshwater metagenome; freshwater
333
259
-
Trp
CCA
[ENA]
¢þ
>WENV181854475
OGWK01003043
[OGWK] freshwater metagenome; freshwater
1158
1232
+
Trp
CCA
[ENA]
¢þ
>WENV181856685
OGWN01009111
[OGWN] freshwater metagenome; freshwater
448
374
-
Trp
CCA
[ENA]
¢þ
>WENV181856707
OGWN01011216
[OGWN] freshwater metagenome; freshwater
130
56
-
Trp
CCA
[ENA]
¢þ
>WENV182865725
OKRQ01000844
[OKRQ] freshwater metagenome; freshwater
1997
1923
-
Trp
CCA
[ENA]
¢þ
>WENV001920
AACY020054070
Marine microbial communities from Global Ocean Sampling (GOS)
2357
2281
-
Trp
CCA
[ENA]
>WENV170572227
FLOH01000635
[FLOH] marine metagenome; water
28841
28917
+
Trp
CCA
[ENA]
¢þ
>WENV170572611
FLOH01001021
[FLOH] marine metagenome; water
1880
1806
-
Trp
CCA
[ENA]
¢þ
>WENV170602060
FUWD010212140
[FUWD] metagenome; unknown
32
108
+
Trp
CCA
[ENA]
¢þ
>WENV170602763
FUWD010262694
[FUWD] metagenome; unknown
446
522
+
Trp
CCA
[ENA]
¢þ
>WENV170606040
FUWD010595164
[FUWD] metagenome; unknown
198
274
+
Trp
CCA
[ENA]
¢þ
>WENV170620914
FUWD013043111
[FUWD] metagenome; unknown
283
359
+
Trp
CCA
[ENA]
¢þ
>WENV170622410
FUWD013102744
[FUWD] metagenome; unknown
745
821
+
Trp
CCA
[ENA]
¢þ
>WENV170624437
FUWD013181582
[FUWD] metagenome; unknown
1656
1580
-
Trp
CCA
[ENA]
¢þ
>WENV170624895
FUWD013188506
[FUWD] metagenome; unknown
699
623
-
Trp
CCA
[ENA]
¢þ
>WENV170625251
FUWD013194206
[FUWD] metagenome; unknown
1611
1535
-
Trp
CCA
[ENA]
¢þ
>WENV170625665
FUWD013202953
[FUWD] metagenome; unknown
732
808
+
Trp
CCA
[ENA]
¢þ
>WENV170629071
FUWD013260100
[FUWD] metagenome; unknown
283
359
+
Trp
CCA
[ENA]
¢þ
>WENV170630634
FUWD013317157
[FUWD] metagenome; unknown
745
821
+
Trp
CCA
[ENA]
¢þ
>WENV170632725
FUWD013386520
[FUWD] metagenome; unknown
1656
1580
-
Trp
CCA
[ENA]
¢þ
>WENV170633158
FUWD013392250
[FUWD] metagenome; unknown
699
623
-
Trp
CCA
[ENA]
¢þ
>WENV170633496
FUWD013397126
[FUWD] metagenome; unknown
1611
1535
-
Trp
CCA
[ENA]
¢þ
>WENV170633889
FUWD013405015
[FUWD] metagenome; unknown
732
808
+
Trp
CCA
[ENA]
¢þ
>WENV170645545
JNSK01000095
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
15875
15801
-
Trp
CCA
[ENA]
¢þ
>C181018654
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
432300
432374
+
Trp
CCA
-
¡û
>C181018690
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
492528
492602
+
Trp
CCA
-
¡û
>C181018753
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
82940
82866
-
Trp
CCA
-
¡û
>C181020818
CP016768
Actinomycetota
Candidatus Nanopelagicus limnes [CP016768]
1115214
1115140
-
Trp
CCA
-
¡û
>C181020864
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1225698
1225624
-
Trp
CCA
-
¡û
>C181020903
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1120484
1120410
-
Trp
CCA
-
¡û
>C181020912
CP016771
Actinomycetota
Candidatus Nanopelagicus hibericus [CP016771]
112446
112520
+
Trp
CCA
-
¡û
>C181020977
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1133774
1133700
-
Trp
CCA
-
¡û
>C181021013
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1116459
1116385
-
Trp
CCA
-
¡û
>C181021049
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1105079
1105005
-
Trp
CCA
-
¡û
>C181021086
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1100153
1100079
-
Trp
CCA
-
¡û
>C181021097
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
176143
176217
+
Trp
CCA
-
¡û
>C181021161
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1106752
1106678
-
Trp
CCA
-
¡û
>C181021198
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1101247
1101173
-
Trp
CCA
-
¡û
>C181021207
CP016779
Actinomycetota
Candidatus Nanopelagicus abundans [CP016779]
99983
100057
+
Trp
CCA
-
¡û
>C181021273
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
1153170
1153096
-
Trp
CCA
-
¡û
>C181021311
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1045444
1045370
-
Trp
CCA
-
¡û
>C181021325
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
209331
209405
+
Trp
CCA
-
¡û
>C181021386
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1175121
1175047
-
Trp
CCA
-
¡û
>WENV024540
AACY020815831
Marine microbial communities from Global Ocean Sampling (GOS)
619
543
-
Trp
CCA
[ENA]
>WENV026176
AACY020946041
Marine microbial communities from Global Ocean Sampling (GOS)
141
217
+
Trp
CCA
[ENA]
>SRA1005159
SRR006907.72246
metagenomic water samples (SRP000427)
78
2
-
Trp
CCA
[SRA]
>WENV038853
AACY021965779
Marine microbial communities from Global Ocean Sampling (GOS)
346
270
-
Trp
CCA
[ENA]
>WENV057314
AACY023291209
Marine microbial communities from Global Ocean Sampling (GOS)
745
667
-
Trp
CCA
[ENA]
>WENV057802
AACY023307154
Marine microbial communities from Global Ocean Sampling (GOS)
102
26
-
Trp
CCA
[ENA]
>WENV057824
AACY023307956
Marine microbial communities from Global Ocean Sampling (GOS)
758
834
+
Trp
CCA
[ENA]
>WENV058028
AACY023314991
Marine microbial communities from Global Ocean Sampling (GOS)
577
501
-
Trp
CCA
[ENA]
>WENV058173
AACY023320003
Marine microbial communities from Global Ocean Sampling (GOS)
1104
1180
+
Trp
CCA
[ENA]
>W121070002
AJWB01000041
Actinomycetota
actinobacterium SCGC AAA027-L06 [AJWB]
3100
3176
+
Trp
CCA
[ENA]
¡û
>WENV058530
AACY023332192
Marine microbial communities from Global Ocean Sampling (GOS)
1342
1266
-
Trp
CCA
[ENA]
>WENV058855
AACY023344575
Marine microbial communities from Global Ocean Sampling (GOS)
769
845
+
Trp
CCA
[ENA]
>WENV058994
AACY023350018
Marine microbial communities from Global Ocean Sampling (GOS)
1373
1449
+
Trp
CCA
[ENA]
>WENV005961
AACY020165574
Marine microbial communities from Global Ocean Sampling (GOS)
540
464
-
Trp
CCA
[ENA]
>WENV006925
AACY020181784
Marine microbial communities from Global Ocean Sampling (GOS)
1086
1162
+
Trp
CCA
[ENA]
>W1610625346
LIAM01000016
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
4865
4939
+
Trp
CCA
[ENA]
¡û
>W1610625378
LIAN01000205
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
76
2
-
Trp
CCA
[ENA]
¡û
>W1610625787
LIBD01000045
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
992
1068
+
Trp
CCA
[ENA]
¡û
>W1610625836
LIBF01000041
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
3388
3464
+
Trp
CCA
[ENA]
¡û
>W1610625858
LIBG01000078
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
2626
2550
-
Trp
CCA
[ENA]
¡û
>W1610626276
LIBZ01000025
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
987
1063
+
Trp
CCA
[ENA]
¡û
>W1610626710
LICQ01000075
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
4551
4627
+
Trp
CCA
[ENA]
¡û
>W1710756473
LIAM01000016
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
4865
4939
+
Trp
CCA
[ENA]
¡û
>W1710756505
LIAN01000205
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
76
2
-
Trp
CCA
[ENA]
¡û
>W1710756914
LIBD01000045
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
992
1068
+
Trp
CCA
[ENA]
¡û
>W1710756963
LIBF01000041
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
3388
3464
+
Trp
CCA
[ENA]
¡û
>W1710756985
LIBG01000078
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
2626
2550
-
Trp
CCA
[ENA]
¡û
>W1710757403
LIBZ01000025
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
987
1063
+
Trp
CCA
[ENA]
¡û
>W1710757837
LICQ01000075
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
4551
4627
+
Trp
CCA
[ENA]
¡û
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(Sample source for ENV)
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Decision
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Representative sequence of each cluster
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