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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184468 (66 seq.)
>W1711048733
LRPX01000093
Fusobacteriota
Fusobacterium equinum [LRPX]
608
532
-
Arg
TCG
[ENA]
¡û
>W1711138564
LVDY01000023
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
174
98
-
Arg
TCG
[ENA]
¡û
>W1711138612
LVDZ01000045
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
234
158
-
Arg
TCG
[ENA]
¡û
>W1711138645
LVEA01000031
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
252380
252304
-
Arg
TCG
[ENA]
¡û
>W1711139082
LVEQ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
798
722
-
Arg
TCG
[ENA]
¡û
>W1711139120
LVER01000039
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
248
172
-
Arg
TCG
[ENA]
¡û
>W1711139190
LVES01000020
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
43442
43518
+
Arg
TCG
[ENA]
¡û
>W1711139212
LVET01000010
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
39379
39455
+
Arg
TCG
[ENA]
¡û
>W1711139269
LVEU01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
98574
98498
-
Arg
TCG
[ENA]
¡û
>W1711139287
LVEV01000004
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
789
713
-
Arg
TCG
[ENA]
¡û
>W1711139363
LVEW01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
234
158
-
Arg
TCG
[ENA]
¡û
>W1711139401
LVEX01000057
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
234
158
-
Arg
TCG
[ENA]
¡û
>W1711139434
LVEY01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
183
107
-
Arg
TCG
[ENA]
¡û
>W1711139486
LVEZ01000048
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
183
107
-
Arg
TCG
[ENA]
¡û
>W1711139513
LVFA01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
296319
296243
-
Arg
TCG
[ENA]
¡û
>W1711139564
LVFB01000056
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
183
107
-
Arg
TCG
[ENA]
¡û
>W1711139612
LVFC01000049
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
164644
164720
+
Arg
TCG
[ENA]
¡û
>W1711139659
LVFD01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
297731
297655
-
Arg
TCG
[ENA]
¡û
>W1711139709
LVFE01000043
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
183
107
-
Arg
TCG
[ENA]
¡û
>W141054959
AOJP01000021
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
10985
11061
+
Arg
TCG
[ENA]
¡û
>WENV182499721
OITU01005088
[OITU] human gut metagenome; human gut
566
490
-
Arg
TCG
[ENA]
¢þ
>W141273937
JAAC01000032
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
2516
2440
-
Arg
TCG
[ENA]
¡û
>W141273979
JAAD01000075
Fusobacteriota
Fusobacterium necrophorum DJ-1 [JAAD]
5146
5222
+
Arg
TCG
[ENA]
¡û
>W141274024
JAAE01000204
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
4461
4537
+
Arg
TCG
[ENA]
¡û
>W141274044
JAAF01000146
Fusobacteriota
Fusobacterium necrophorum DAB [JAAF]
4089
4165
+
Arg
TCG
[ENA]
¡û
>W141274077
JAAG01000366
Fusobacteriota
Fusobacterium necrophorum BFTR-2 [JAAG]
2263
2187
-
Arg
TCG
[ENA]
¡û
>W141274091
JAAH01000052
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
33362
33438
+
Arg
TCG
[ENA]
¡û
>WENV183017630
OLEW01005463
[OLEW] human gut metagenome; human gut
354
430
+
Arg
TCG
[ENA]
¢þ
>WENV183116211
OLNQ01073394
[OLNQ] human gut metagenome; faeces
566
642
+
Arg
TCG
[ENA]
¢þ
>C181161112
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
751636
751560
-
Arg
TCG
-
¡û
>C181161188
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
890455
890379
-
Arg
TCG
-
¡û
>C191015386
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
550359
550283
-
Arg
TCG
-
¡û
>C191016057
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
652361
652285
-
Arg
TCG
-
¡û
>C191113348
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
397967
398043
+
Arg
TCG
-
¡û
>C191132428
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
1162000
1161924
-
Arg
TCG
-
¡û
>W141559439
JHWT01000001
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
65869
65945
+
Arg
TCG
[ENA]
¡û
>W09118598
ACDD01000048
Fusobacteriota
Fusobacterium gonidiaformans 3_1_5R [ACDD]
61267
61191
-
Arg
TCG
[ENA]
¡û
>W09118749
ACDG01000067
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
24125
24201
+
Arg
TCG
[ENA]
¡û
>W09120610
ACET01000016
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [ACET]
58201
58125
-
Arg
TCG
[ENA]
¡û
>W1911160137
NPNE01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_LM [NPNE]
161053
161129
+
Arg
TCG
[ENA]
¡û
>W1911160184
NPNF01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_CP [NPNF]
203
127
-
Arg
TCG
[ENA]
¡û
>W1610026563
AUZI01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
10518
10594
+
Arg
TCG
[ENA]
¡û
>W121001902
ADLZ01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
69523
69599
+
Arg
TCG
[ENA]
¡û
>W121066990
AJSY01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
75738
75814
+
Arg
TCG
[ENA]
¡û
>W121112320
ALKK01000083
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme Fnf 1007 [ALKK]
117786
117862
+
Arg
TCG
[ENA]
¡û
>W1610889862
LRPX01000093
Fusobacteriota
Fusobacterium equinum [LRPX]
608
532
-
Arg
TCG
[ENA]
¡û
>W1610949604
LVDY01000023
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
174
98
-
Arg
TCG
[ENA]
¡û
>W1610949652
LVDZ01000045
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
234
158
-
Arg
TCG
[ENA]
¡û
>W1610949685
LVEA01000031
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
252380
252304
-
Arg
TCG
[ENA]
¡û
>W1610950090
LVEQ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
798
722
-
Arg
TCG
[ENA]
¡û
>W1610950128
LVER01000039
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
248
172
-
Arg
TCG
[ENA]
¡û
>W1610950198
LVES01000020
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
43442
43518
+
Arg
TCG
[ENA]
¡û
>W1610950220
LVET01000010
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
39379
39455
+
Arg
TCG
[ENA]
¡û
>W1610950277
LVEU01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
98574
98498
-
Arg
TCG
[ENA]
¡û
>W1610950295
LVEV01000004
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
789
713
-
Arg
TCG
[ENA]
¡û
>W1610950371
LVEW01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
234
158
-
Arg
TCG
[ENA]
¡û
>W1610950409
LVEX01000057
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
234
158
-
Arg
TCG
[ENA]
¡û
>W1610950442
LVEY01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
183
107
-
Arg
TCG
[ENA]
¡û
>W1610950494
LVEZ01000048
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
183
107
-
Arg
TCG
[ENA]
¡û
>W1610950521
LVFA01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
296319
296243
-
Arg
TCG
[ENA]
¡û
>W1610950572
LVFB01000056
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
183
107
-
Arg
TCG
[ENA]
¡û
>W1610950620
LVFC01000049
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
164644
164720
+
Arg
TCG
[ENA]
¡û
>W1610950667
LVFD01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
297731
297655
-
Arg
TCG
[ENA]
¡û
>W1610950717
LVFE01000043
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
183
107
-
Arg
TCG
[ENA]
¡û
>W1710022612
AUZI01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
10518
10594
+
Arg
TCG
[ENA]
¡û
>W1710510361
FMXX01000009
Fusobacteriota
Fusobacterium necrophorum [FMXX]
2302
2226
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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