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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184545 (49 seq.)
>W131230861
AUHZ01000005
Actinomycetota
Acidipropionibacterium thoenii DSM 20276 [AUHZ]
92019
92095
+
Ile
GAT
[ENA]
¡û
>C171044687
CP015970
Actinomycetota
Acidipropionibacterium acidipropionici F3E8 [CP015970]
2546043
2546119
+
Ile
GAT
-
¡û
>C171092723
CP019400
Actinomycetota
Acidipropionibacterium acidipropionici WSH1105 [CP019400]
2175819
2175895
+
Ile
GAT
-
¡û
>W131224939
AUDD01000043
Actinomycetota
Acidipropionibacterium jensenii DSM 20535 [AUDD]
7316
7240
-
Ile
GAT
[ENA]
¡û
>W141055806
AOSS01000100
Actinomycetota
Cutibacterium granulosum DSM 20700 [AOSS]
8743
8819
+
Ile
GAT
[ENA]
¡û
>W141055850
AOST01000023
Actinomycetota
Cutibacterium granulosum TM11 [AOST]
34088
34164
+
Ile
GAT
[ENA]
¡û
>WENV180745631
ODHL01000955
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
1110
1185
+
Ile
GAT
[ENA]
¢þ
>WENV180765641
ODIC01018605
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
860
934
+
Ile
GAT
[ENA]
¢þ
>WENV181006924
ODWC01000045
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
28388
28463
+
Ile
GAT
[ENA]
¢þ
>WENV181123241
OEFP01000001
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
371432
371506
+
Ile
GAT
[ENA]
¢þ
>WENV181814220
OGTF01000812
[OGTF] human gut metagenome; fecal sample 5 from infant 5
1792
1867
+
Ile
GAT
[ENA]
¢þ
>WENV182635931
OJKZ01000026
[OJKZ] metagenome; surface
51689
51614
-
Ile
GAT
[ENA]
¢þ
>WENV182639969
OJLB01000004
[OJLB] metagenome; surface
91271
91346
+
Ile
GAT
[ENA]
¢þ
>WENV182643546
OJLW01000044
[OJLW] metagenome; surface
3910
3835
-
Ile
GAT
[ENA]
¢þ
>WENV182644577
OJLY01000016
[OJLY] metagenome; surface
28700
28625
-
Ile
GAT
[ENA]
¢þ
>WENV182799895
OJTY01000001
[OJTY] human gut metagenome; human gut
235079
235004
-
Ile
GAT
[ENA]
¢þ
>WENV182800684
OJUF01000477
[OJUF] human gut metagenome; human gut
4655
4580
-
Ile
GAT
[ENA]
¢þ
>WENV182804542
OJUV01000532
[OJUV] human gut metagenome; human gut
2468
2542
+
Ile
GAT
[ENA]
¢þ
>WENV182807560
OJVY01000003
[OJVY] human gut metagenome; human gut
82973
82898
-
Ile
GAT
[ENA]
¢þ
>WENV182807799
OJVZ01004052
[OJVZ] human gut metagenome; human gut
156
81
-
Ile
GAT
[ENA]
¢þ
>WENV182816447
OJZA01000870
[OJZA] human gut metagenome; human gut
3720
3795
+
Ile
GAT
[ENA]
¢þ
>WENV182818042
OJZN01004088
[OJZN] human gut metagenome; human gut
353
428
+
Ile
GAT
[ENA]
¢þ
>WENV182835549
OKFO01000098
[OKFO] human gut metagenome; human gut
8745
8820
+
Ile
GAT
[ENA]
¢þ
>WENV182837433
OKGH01000032
[OKGH] human gut metagenome; human gut
59086
59011
-
Ile
GAT
[ENA]
¢þ
>WENV182845650
OKJE01000328
[OKJE] human gut metagenome; human gut
76
1
-
Ile
GAT
[ENA]
¢þ
>WENV182845911
OKJH01001269
[OKJH] human gut metagenome; human gut
573
498
-
Ile
GAT
[ENA]
¢þ
>WENV182847818
OKKD01001809
[OKKD] human gut metagenome; human gut
629
704
+
Ile
GAT
[ENA]
¢þ
>WENV182849516
OKKR01003362
[OKKR] human gut metagenome; human gut
443
518
+
Ile
GAT
[ENA]
¢þ
>WENV182849699
OKKT01000690
[OKKT] human gut metagenome; human gut
1681
1756
+
Ile
GAT
[ENA]
¢þ
>WENV182851665
OKLR01000020
[OKLR] human gut metagenome; human gut
9915
9840
-
Ile
GAT
[ENA]
¢þ
>WENV182852237
OKLW01000156
[OKLW] human gut metagenome; human gut
29648
29573
-
Ile
GAT
[ENA]
¢þ
>WENV182852431
OKLY01000031
[OKLY] human gut metagenome; human gut
1349
1424
+
Ile
GAT
[ENA]
¢þ
>WENV182858678
OKOG01000002
[OKOG] human gut metagenome; human gut
453214
453289
+
Ile
GAT
[ENA]
¢þ
>WENV182859041
OKOK01001081
[OKOK] human gut metagenome; human gut
363
438
+
Ile
GAT
[ENA]
¢þ
>WENV182859545
OKOO01004422
[OKOO] human gut metagenome; human gut
490
565
+
Ile
GAT
[ENA]
¢þ
>WENV182863260
OKPS01000031
[OKPS] human gut metagenome; human gut
4905
4981
+
Ile
GAT
[ENA]
¢þ
>C181224521
LT906441
Actinomycetota
Cutibacterium granulosum NCTC11865 [LT906441]
509150
509225
+
Ile
GAT
-
¡û
>C191030061
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
27478
27554
+
Ile
GAT
-
¡û
>C191036576
CP025571
Actinomycetota
Acidipropionibacterium jensenii JS279 [CP025571]
29173
29248
+
Ile
GAT
-
¡û
>C191073509
CP031057
Actinomycetota
Acidipropionibacterium acidipropionici WGS7 [CP031057]
330258
330182
-
Ile
GAT
-
¡û
>C191180498
CP040635
Actinomycetota
Acidipropionibacterium jensenii FAM 19038 [CP040635]
1118289
1118364
+
Ile
GAT
-
¡û
>C191211320
LR134473
Actinomycetota
Acidipropionibacterium jensenii NCTC13652 [LR134473]
1787385
1787460
+
Ile
GAT
-
¡û
>C161051603
CP013126
Actinomycetota
Acidipropionibacterium acidipropionici CGMCC 1.2230 [CP013126]
1113610
1113534
-
Ile
GAT
-
¡û
>C161071862
CP014352
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 55737 [CP014352]
2247407
2247483
+
Ile
GAT
[Ensembl]
¡û
>C131003843
CP003493
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 4875 [CP003493]
28007
28083
+
Ile
GAT
[Ensembl]
¡û
>W1610521572
JNBU01000004
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
111461
111385
-
Ile
GAT
[ENA]
¡û
>W1610521602
JNBU01000072
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
8743
8819
+
Ile
GAT
[ENA]
¡û
>W1710620857
JNBU01000004
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
111461
111385
-
Ile
GAT
[ENA]
¡û
>W1710620887
JNBU01000072
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
8743
8819
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK