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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184549 (49 seq.)
>W1710785645
LJIA01000019
Betaproteobacteria
beta proteobacterium AAP99 [LJIA]
113535
113611
+
Met
CAT
[ENA]
¡û
>W1710990936
LPXH01000025
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
6072
5996
-
Met
CAT
[ENA]
¡û
>W1710990941
LPXH01000027
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
109391
109467
+
Met
CAT
[ENA]
¡û
>W1710990945
LPXH01000027
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
53326
53250
-
Met
CAT
[ENA]
¡û
>W1711628376
MPOE01000014
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
664160
664236
+
Met
CAT
[ENA]
¡û
>W1711628377
MPOE01000014
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
608089
608013
-
Met
CAT
[ENA]
¡û
>W1711628398
MPOE01000018
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
409287
409363
+
Met
CAT
[ENA]
¡û
>W1711628467
MPOF01000022
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
5315
5239
-
Met
CAT
[ENA]
¡û
>W1711628486
MPOF01000046
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
61559
61635
+
Met
CAT
[ENA]
¡û
>W1711628493
MPOF01000046
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
5516
5440
-
Met
CAT
[ENA]
¡û
>C171104835
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
1502653
1502729
+
Met
CAT
-
¡û
>C171104891
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
2163939
2163863
-
Met
CAT
-
¡û
>C171104897
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
1446601
1446525
-
Met
CAT
-
¡û
>WENV180018465
FSZK01000036
[FSZK] metagenome; soil
8019
8095
+
fMet
CAT
[ENA]
¢þ
>WENV180025935
FTIR01000470
[FTIR] metagenome; soil
1937
1861
-
fMet
CAT
[ENA]
¢þ
>WENV181520981
OGHD01060150
[OGHD] metagenome; Human gut stool
61
137
+
fMet
CAT
[ENA]
¢þ
>W141237774
BBJR01000035
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
34152
34228
+
Met
CAT
[ENA]
¡û
>W141237793
BBJR01000051
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
6880
6804
-
Met
CAT
[ENA]
¡û
>W141237794
BBJR01000051
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
6645
6569
-
Met
CAT
[ENA]
¡û
>W141319071
JBOK01000026
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
34309
34385
+
Met
CAT
[ENA]
¡û
>WENV183743311
PJUJ01000400
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
5160
5236
+
fMet
CAT
[ENA]
¢þ
>WENV183743387
PJUJ01000803
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
3238
3162
-
fMet
CAT
[ENA]
¢þ
>WENV183744049
PJUK01000229
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
5158
5234
+
fMet
CAT
[ENA]
¢þ
>WENV183744133
PJUK01000673
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
7903
7979
+
fMet
CAT
[ENA]
¢þ
>WENV183744906
PJUL01000598
[PJUL] feces metagenome; Chicken feces enriched on filter paper
5167
5243
+
fMet
CAT
[ENA]
¢þ
>WENV183745041
PJUL01001565
[PJUL] feces metagenome; Chicken feces enriched on filter paper
1678
1602
-
fMet
CAT
[ENA]
¢þ
>W1911573341
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
1543023
1542947
-
Met
CAT
[ENA]
¡û
>W1911573352
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
273955
273879
-
Met
CAT
[ENA]
¡û
>W1511516944
JXWN01000042
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
46911
46987
+
Met
CAT
[ENA]
¡û
>W1511516945
JXWN01000042
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
47147
47223
+
Met
CAT
[ENA]
¡û
>W1511517010
JXWN01000108
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
28723
28799
+
Met
CAT
[ENA]
¡û
>W1511705396
LGRD01000032
Betaproteobacteria
Methylibium sp. NZG [LGRD]
53336
53412
+
Met
CAT
[ENA]
¡û
>C161002809
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
711884
711960
+
Met
CAT
-
¡û
>C161002810
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
712120
712196
+
Met
CAT
-
¡û
>C161002842
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
2991501
2991577
+
Met
CAT
-
¡û
>W1610062653
BCNR01000014
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
375836
375760
-
Met
CAT
[ENA]
¡û
>W1610062656
BCNR01000015
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
273798
273722
-
Met
CAT
[ENA]
¡û
>W1610609948
LFYP01000016
Betaproteobacteria
Comamonas kerstersii [LFYP]
8440
8364
-
Met
CAT
[ENA]
¡û
>W1610609949
LFYP01000017
Betaproteobacteria
Comamonas kerstersii [LFYP]
26817
26893
+
Met
CAT
[ENA]
¡û
>W1610609996
LFYP01000105
Betaproteobacteria
Comamonas kerstersii [LFYP]
59720
59796
+
Met
CAT
[ENA]
¡û
>W1610649451
LJIA01000019
Betaproteobacteria
beta proteobacterium AAP99 [LJIA]
113535
113611
+
Met
CAT
[ENA]
¡û
>W1610845608
LPXH01000025
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
6072
5996
-
Met
CAT
[ENA]
¡û
>W1610845613
LPXH01000027
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
109391
109467
+
Met
CAT
[ENA]
¡û
>W1610845617
LPXH01000027
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
53326
53250
-
Met
CAT
[ENA]
¡û
>W1710060129
BCNR01000014
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
375836
375760
-
Met
CAT
[ENA]
¡û
>W1710060132
BCNR01000015
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
273798
273722
-
Met
CAT
[ENA]
¡û
>W1710731293
LFYP01000016
Betaproteobacteria
Comamonas kerstersii [LFYP]
8440
8364
-
Met
CAT
[ENA]
¡û
>W1710731294
LFYP01000017
Betaproteobacteria
Comamonas kerstersii [LFYP]
26817
26893
+
Met
CAT
[ENA]
¡û
>W1710731341
LFYP01000105
Betaproteobacteria
Comamonas kerstersii [LFYP]
59720
59796
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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