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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184563 (46 seq.)
>W131220230
ATZF01000001
Bacillota
Shimazuella kribbensis DSM 45090 [ATZF]
78452
78528
+
Met
CAT
[ENA]
¡û
>W131000618
AGEQ01000001
Bacillota
Paenisporosarcina sp. HGH0030 [AGEQ]
807
883
+
Met
CAT
[ENA]
¡û
>W131000638
AGEQ01000015
Bacillota
Paenisporosarcina sp. HGH0030 [AGEQ]
242963
242887
-
Met
CAT
[ENA]
¡û
>W131000660
AGEQ01000018
Bacillota
Paenisporosarcina sp. HGH0030 [AGEQ]
277154
277230
+
Met
CAT
[ENA]
¡û
>C171092778
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
533993
534069
+
Met
CAT
-
¡û
>C171092791
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
1029659
1029735
+
Met
CAT
-
¡û
>C171092817
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
1215070
1215146
+
Met
CAT
-
¡û
>WENV180101098
OAOU01000548
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
147
223
+
fMet
CAT
[ENA]
¢þ
>WENV180101121
OAOU01000887
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
4149
4073
-
fMet
CAT
[ENA]
¢þ
>WENV180101186
OAOU01004416
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
113
37
-
fMet
CAT
[ENA]
¢þ
>WENV180101416
OAOU01059279
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
3
79
+
fMet
CAT
[ENA]
¢þ
>WENV180624431
OCQH01045682
[OCQH] human gut metagenome; human gut
238
162
-
fMet
CAT
[ENA]
¢þ
>WENV180885370
ODME01002411
[ODME] human metagenome; G_DNA_Stool
7187
7263
+
fMet
CAT
[ENA]
¢þ
>WENV180885443
ODME01003052
[ODME] human metagenome; G_DNA_Stool
6700
6776
+
fMet
CAT
[ENA]
¢þ
>W141093249
AVBB01000026
Bacillota
Priestia megaterium MSP20.1 [AVBB]
98
174
+
Met
CAT
[ENA]
¡û
>W141168732
AXVE01000003
Bacillota
Sporosarcina sp. EUR3 2.2.2 [AXVE]
146
222
+
Met
CAT
[ENA]
¡û
>W141168757
AXVE01000017
Bacillota
Sporosarcina sp. EUR3 2.2.2 [AXVE]
63
139
+
Met
CAT
[ENA]
¡û
>WENV181967934
OGZW01000014
[OGZW] human gut metagenome; faeces
72729
72653
-
fMet
CAT
[ENA]
¢þ
>WENV182023799
OHCF01000162
[OHCF] human gut metagenome; feces
44430
44506
+
fMet
CAT
[ENA]
¢þ
>W141263838
CCDO010000002
Bacillota
Virgibacillus halodenitrificans [CCDO]
1524107
1524183
+
Met
CAT
[ENA]
¡û
>W141263895
CCDO010000007
Bacillota
Virgibacillus halodenitrificans [CCDO]
215199
215123
-
Met
CAT
[ENA]
¡û
>WENV183207328
OLQA01011675
[OLQA] human gut metagenome; faeces
109
33
-
fMet
CAT
[ENA]
¢þ
>WENV183654216
OQWA01015752
[OQWA] human gut metagenome; human gut
319
243
-
fMet
CAT
[ENA]
¢þ
>C181044082
CP020357
Bacillota
Oceanobacillus iheyensis CHQ24 [CP020357]
865314
865390
+
Met
CAT
-
¡û
>C191098882
CP033046
Bacillota
Virgibacillus sp. Bac332 [CP033046]
1842494
1842570
+
Met
CAT
-
¡û
>C191099012
CP033049
Bacillota
Virgibacillus halodenitrificans Bac324 [CP033049]
2620622
2620546
-
Met
CAT
-
¡û
>C191099018
CP033049
Bacillota
Virgibacillus halodenitrificans Bac324 [CP033049]
2392017
2391941
-
Met
CAT
-
¡û
>C191157102
CP038015
Bacillota
Paenisporosarcina antarctica CGMCC 1.6503 [CP038015]
437190
437266
+
Met
CAT
-
¡û
>C191157116
CP038015
Bacillota
Paenisporosarcina antarctica CGMCC 1.6503 [CP038015]
844036
844112
+
Met
CAT
-
¡û
>C191157117
CP038015
Bacillota
Paenisporosarcina antarctica CGMCC 1.6503 [CP038015]
844270
844346
+
Met
CAT
-
¡û
>C191157141
CP038015
Bacillota
Paenisporosarcina antarctica CGMCC 1.6503 [CP038015]
1063497
1063573
+
Met
CAT
-
¡û
>W1910373716
FUHR01000006
Bacillota
Virgibacillus halodenitrificans Marseille-P736 [FUHR]
795431
795355
-
Met
CAT
[ENA]
¡û
>W1910373722
FUHR01000006
Bacillota
Virgibacillus halodenitrificans Marseille-P736 [FUHR]
577651
577575
-
Met
CAT
[ENA]
¡û
>W1910512119
FYLK01000047
Bacillota
Streptococcus pneumoniae UoS2235 [FYLK]
6949
6876
-
Met
CAT
[ENA]
¡û
>W1810057803
PDIZ01000001
Bacillota
Bacillus sp. es.036 [PDIZ]
3577480
3577404
-
Met
CAT
[ENA]
¡û
>W1810057814
PDIZ01000001
Bacillota
Bacillus sp. es.036 [PDIZ]
2030642
2030566
-
Met
CAT
[ENA]
¡û
>W1810057847
PDIZ01000003
Bacillota
Bacillus sp. es.036 [PDIZ]
135957
136033
+
Met
CAT
[ENA]
¡û
>W1810057856
PDIZ01000003
Bacillota
Bacillus sp. es.036 [PDIZ]
385474
385550
+
Met
CAT
[ENA]
¡û
>C151044618
CP009129
Bacillota
Planococcus sp. PAMC 21323 [CP009129]
423452
423528
+
Met
CAT
[Ensembl]
¡û
>C151044629
CP009129
Bacillota
Planococcus sp. PAMC 21323 [CP009129]
842061
842137
+
Met
CAT
[Ensembl]
¡û
>C151044657
CP009129
Bacillota
Planococcus sp. PAMC 21323 [CP009129]
1021130
1021206
+
Met
CAT
[Ensembl]
¡û
>W1510402216
COAV02000076
Bacillota
Streptococcus pneumoniae BR1074 [COAV]
103
30
-
Met
CAT
[ENA]
¡û
>W121106201
ALCD01000008
Bacillota
Streptococcus pneumoniae SPAR95 [ALCD]
133247
133174
-
Met
CAT
[ENA]
¡û
>W1610057493
BBXV01000031
Bacillota
Oceanobacillus picturae [BBXV]
7312
7236
-
Met
CAT
[ENA]
¡û
>WENV077873
AAFX01117025
Soil microbial communities from Minnesota Farm
543
619
+
Met
CAT
[ENA]
>W1710054192
BBXV01000031
Bacillota
Oceanobacillus picturae [BBXV]
7312
7236
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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