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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184579 (19 seq.)
>W1711073778
LSIX01000715
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
25495
25411
-
Leu
CAG
[ENA]
¡û
>W1711078685
LSNC01000046
Alphaproteobacteria
Methylorubrum populi [LSNC]
60307
60391
+
Leu
CAG
[ENA]
¡û
>W131051719
AMXU01000014
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
21337
21253
-
Leu
CAG
[ENA]
¡û
>w001796
AAAP01000108
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
381
465
+
Leu
CAG
[ENA]
¡û
>C08006648
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
5213311
5213395
+
Leu
CAG
[Ensembl]
¡û
>WENV183726077
PJQF01076097
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
176
260
+
Leu
CAG
[ENA]
¢þ
>WENV170577313
FRDC01004414
[FRDC] freshwater metagenome; water
5759
5843
+
Leu
CAG
[ENA]
¢þ
>WENV170590954
FUFK010745972
[FUFK] metagenome; unknown
198
282
+
Leu
CAG
[ENA]
¢þ
>WENV170680680
LFEF01009719
[LFEF] freshwater metagenome; waterbloom
460
544
+
Leu
CAG
[ENA]
¢þ
>C181000361
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
5122134
5122218
+
Leu
CAG
-
¡û
>C181175648
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
5045840
5045924
+
Leu
CAG
-
¡û
>C181180014
CP029550
Alphaproteobacteria
Methylobacterium durans 17SD2-17 [CP029550]
1856743
1856659
-
Leu
CAG
-
¡û
>C181180035
CP029551
Alphaproteobacteria
Methylobacterium radiodurans 17Sr1-43 [CP029551]
2096317
2096401
+
Leu
CAG
-
¡û
>W09107191
ABFR01000008
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
106403
106487
+
Leu
CAG
[ENA]
¡û
>W1610043192
BAZP01001613
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
183
267
+
Leu
CAG
[ENA]
¡û
>W1610913083
LSIX01000715
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
25495
25411
-
Leu
CAG
[ENA]
¡û
>W1610917595
LSNC01000046
Alphaproteobacteria
Methylorubrum populi [LSNC]
60307
60391
+
Leu
CAG
[ENA]
¡û
>W1710040352
BAZP01001613
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
183
267
+
Leu
CAG
[ENA]
¡û
>W1710567568
FOSV01000036
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
8315
8231
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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