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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184592 (73 seq.)
>W1711069260
LSFN01000010
Bacillota
Paenibacillus crassostreae LPB0068 [LSFN]
24241
24316
+
Arg
TCT
[ENA]
¡û
>W1711069261
LSFN01000010
Bacillota
Paenibacillus crassostreae LPB0068 [LSFN]
27454
27379
-
Arg
TCT
[ENA]
¡û
>W1711146865
LVJF01000014
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
344815
344892
+
Arg
TCT
[ENA]
¡û
>W1711146866
LVJF01000014
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
357178
357105
-
Arg
TCT
[ENA]
¡û
>W1711146944
LVJG01000014
Bacillota
Paenibacillus macquariensis subsp. defensor [LVJG]
49836
49909
+
Arg
TCT
[ENA]
¡û
>W1711146971
LVJG01000014
Bacillota
Paenibacillus macquariensis subsp. defensor [LVJG]
62243
62166
-
Arg
TCT
[ENA]
¡û
>W1711147031
LVJH01000001
Bacillota
Paenibacillus glacialis [LVJH]
49758
49831
+
Arg
TCT
[ENA]
¡û
>W1711147137
LVJI01000001
Bacillota
Paenibacillus antarcticus [LVJI]
48868
48944
+
Arg
TCT
[ENA]
¡û
>W1711147164
LVJI01000001
Bacillota
Paenibacillus antarcticus [LVJI]
59796
59719
-
Arg
TCT
[ENA]
¡û
>W1711166793
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
515763
515839
+
Arg
TCT
[ENA]
¡û
>W1711330248
MBMU01000051
Bacillota
Planococcus faecalis [MBMU]
4204
4277
+
Arg
TCT
[ENA]
¡û
>W131202723
ASXD01000009
Bacillota
Exiguobacterium sp. S17 [ASXD]
52527
52453
-
Arg
TCT
[ENA]
¡û
>W1711603261
MOLV01000016
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
82539
82463
-
Arg
TCT
[ENA]
¡û
>W1712017265
NESR01000006
Bacillota
Kurthia gibsonii [NESR]
377737
377662
-
Arg
TCT
[ENA]
¡û
>C171067526
CP017770
Bacillota
Paenibacillus crassostreae LPB0068 [CP017770]
1392985
1393060
+
Arg
TCT
-
¡û
>C171067599
CP017770
Bacillota
Paenibacillus crassostreae LPB0068 [CP017770]
1396198
1396123
-
Arg
TCT
-
¡û
>C171092825
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
1403318
1403391
+
Arg
TCT
-
¡û
>W131055412
ANBV01000005
Bacillota
Planococcus halocryophilus Or1 [ANBV]
234847
234920
+
Arg
TCT
[ENA]
¡û
>w003650
AADW02000006
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
61443
61519
+
Arg
TCT
[ENA]
¡û
>W141194424
AYTB01000008
Bacillota
Kurthia huakuii LAM0618 [AYTB]
654502
654426
-
Arg
TCT
[ENA]
¡û
>W141239479
CAEP01000041
Bacillota
Kurthia sp. Dielmo [CAEP]
27183
27107
-
Arg
TCT
[ENA]
¡û
>W141239753
CAEU01000018
Bacillota
Kurthia massiliensis JC30 [CAEU]
23868
23793
-
Arg
TCT
[ENA]
¡û
>W141239910
CAEW01000016
Bacillota
Kurthia senegalensis JC8E [CAEW]
129474
129398
-
Arg
TCT
[ENA]
¡û
>C08004833
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
2112119
2112043
-
Arg
TCT
[Ensembl]
¡û
>WENV170022179
BCQK01001291
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1256
1332
+
Arg
TCT
[ENA]
¢þ
>WENV170700393
LIDZ01013321
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
50193
50266
+
Arg
TCT
[ENA]
¢þ
>C181171425
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
2655112
2655036
-
Arg
TCT
-
¡û
>C191211416
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
2673799
2673724
-
Arg
TCT
-
¡û
>W141563057
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
645977
646053
+
Arg
TCT
[ENA]
¡û
>W141563180
JHZU01000005
Bacillota
Exiguobacterium undae 190-11 [JHZU]
670449
670525
+
Arg
TCT
[ENA]
¡û
>W141563239
JHZV01000004
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
664304
664380
+
Arg
TCT
[ENA]
¡û
>W141701533
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
457977
457901
-
Arg
TCT
[ENA]
¡û
>W141726078
JNAA01000109
Bacillota
Exiguobacterium sp. AB2 [JNAA]
137483
137409
-
Arg
TCT
[ENA]
¡û
>W141731042
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
672540
672464
-
Arg
TCT
[ENA]
¡û
>W1910183826
BJOB01000031
Bacillota
Kurthia gibsonii NBRC 15534 [BJOB]
24569
24644
+
Arg
TCT
[ENA]
¡û
>W1910577294
JTFC01000007
Bacillota
Kurthia sp. 3B1D [JTFC]
103517
103590
+
Arg
TCT
[ENA]
¡û
>W1911770667
QXJB01000002
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
468089
468015
-
Arg
TCT
[ENA]
¡û
>W1911817964
QZNE01000005
Bacillota
Kurthia gibsonii B83 [QZNE]
34255
34330
+
Arg
TCT
[ENA]
¡û
>W1810392857
PYAT01000008
Bacillota
Planomicrobium soli CGMCC 1.12259 [PYAT]
83086
83013
-
Arg
TCT
[ENA]
¡û
>W1810591584
QFVS01000001
Bacillota
Kurthia zopfii ATCC 33403 [QFVS]
1488
1564
+
Arg
TCT
[ENA]
¡û
>W1810685499
QKZI01000001
Bacillota
Psychrobacillus insolitus DSM 5 [QKZI]
145541
145616
+
Arg
TCT
[ENA]
¡û
>W1810685500
QKZI01000001
Bacillota
Psychrobacillus insolitus DSM 5 [QKZI]
145898
145973
+
Arg
TCT
[ENA]
¡û
>W1810760513
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
464300
464374
+
Arg
TCT
[ENA]
¡û
>W1810823244
QSGS01000003
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
112737
112811
+
Arg
TCT
[ENA]
¡û
>C151044665
CP009129
Bacillota
Planococcus sp. PAMC 21323 [CP009129]
1198123
1198196
+
Arg
TCT
[Ensembl]
¡û
>C151074820
CP010976
Bacillota
Paenibacillus sp. IHBB 10380 [CP010976]
513462
513387
-
Arg
TCT
[Ensembl]
¡û
>W1511325246
JQGI01000001
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
196557
196631
+
Arg
TCT
[ENA]
¡û
>W11142467
AEPB01000038
Bacillota
Planococcus donghaensis MPA1U2 [AEPB]
16495
16568
+
Arg
TCT
[ENA]
¡û
>W1511568332
LAJA01000001
Bacillota
Domibacillus tundrae PAMC 80007 [LAJA]
626084
626160
+
Arg
TCT
[ENA]
¡û
>C161053262
CP013217
Bacillota
Kurthia sp. 11kri321 [CP013217]
911551
911626
+
Arg
TCT
[Ensembl]
¡û
>C161058789
CP013661
Bacillota
Planococcus kocurii ATCC 43650 [CP013661]
380027
379954
-
Arg
TCT
[Ensembl]
¡û
>C161074480
CP014616
Bacillota
Sporosarcina psychrophila DSM 6497 [CP014616]
1703911
1703984
+
Arg
TCT
[Ensembl]
¡û
>C161098318
CP016534
Bacillota
Planococcus antarcticus DSM 14505 [CP016534]
2866940
2866867
-
Arg
TCT
[Ensembl]
¡û
>C161098387
CP016537
Bacillota
Planococcus halocryophilus DSM 24743 [CP016537]
484090
484163
+
Arg
TCT
[Ensembl]
¡û
>C161098626
CP016540
Bacillota
Planococcus versutus L10.15 [CP016540]
211846
211773
-
Arg
TCT
[Ensembl]
¡û
>C161098696
CP016543
Bacillota
Planococcus donghaensis DSM 22276 [CP016543]
2017690
2017617
-
Arg
TCT
[Ensembl]
¡û
>W121071556
AJYB01000059
Bacillota
Planococcus antarcticus DSM 14505 [AJYB]
27625
27552
-
Arg
TCT
[ENA]
¡û
>C131001846
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
1955033
1954957
-
Arg
TCT
[Ensembl]
¡û
>W1610909788
LSFN01000010
Bacillota
Paenibacillus crassostreae LPB0068 [LSFN]
24241
24316
+
Arg
TCT
[ENA]
¡û
>W1610909789
LSFN01000010
Bacillota
Paenibacillus crassostreae LPB0068 [LSFN]
27454
27379
-
Arg
TCT
[ENA]
¡û
>W1610957762
LVJF01000014
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
344815
344892
+
Arg
TCT
[ENA]
¡û
>W1610957763
LVJF01000014
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
357178
357105
-
Arg
TCT
[ENA]
¡û
>W1610957841
LVJG01000014
Bacillota
Paenibacillus macquariensis subsp. defensor [LVJG]
49836
49909
+
Arg
TCT
[ENA]
¡û
>W1610957868
LVJG01000014
Bacillota
Paenibacillus macquariensis subsp. defensor [LVJG]
62243
62166
-
Arg
TCT
[ENA]
¡û
>W1610957928
LVJH01000001
Bacillota
Paenibacillus glacialis [LVJH]
49758
49831
+
Arg
TCT
[ENA]
¡û
>W1610958034
LVJI01000001
Bacillota
Paenibacillus antarcticus [LVJI]
48868
48944
+
Arg
TCT
[ENA]
¡û
>W1610958061
LVJI01000001
Bacillota
Paenibacillus antarcticus [LVJI]
59796
59719
-
Arg
TCT
[ENA]
¡û
>W1610977333
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
515763
515839
+
Arg
TCT
[ENA]
¡û
>W1710569555
FOUN01000011
Bacillota
Psychrobacillus psychrodurans [FOUN]
13799
13724
-
Arg
TCT
[ENA]
¡û
>W1710573823
FOXU01000003
Bacillota
Psychrobacillus psychrotolerans [FOXU]
205792
205867
+
Arg
TCT
[ENA]
¡û
>W1710573824
FOXU01000003
Bacillota
Psychrobacillus psychrotolerans [FOXU]
211203
211130
-
Arg
TCT
[ENA]
¡û
>W1710597761
FTNK01000003
Bacillota
Paenibacillus macquariensis [FTNK]
480308
480385
+
Arg
TCT
[ENA]
¡û
>W1710597762
FTNK01000003
Bacillota
Paenibacillus macquariensis [FTNK]
492671
492598
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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