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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184635 (58 seq.)
>W1710868387
LMJA01000030
Actinomycetota
Mycobacterium sp. Root265 [LMJA]
420103
420177
+
Met
CAT
[ENA]
¡û
>W1711004905
LQMX01000010
Actinomycetota
Mycolicibacterium neoaurum [LQMX]
180337
180411
+
Met
CAT
[ENA]
¡û
>W1711006477
LQOJ01000073
Actinomycetota
Mycolicibacterium fallax [LQOJ]
145659
145733
+
Met
CAT
[ENA]
¡û
>W1711006589
LQOL01000078
Actinomycetota
Mycolicibacterium canariasense [LQOL]
323
249
-
Met
CAT
[ENA]
¡û
>W1711007358
LQPC01000027
Actinomycetota
Mycolicibacterium iranicum [LQPC]
124737
124663
-
Met
CAT
[ENA]
¡û
>W1711173274
LWCS01000085
Actinomycetota
Mycolicibacterium iranicum [LWCS]
2901
2827
-
Met
CAT
[ENA]
¡û
>W1711286103
LZSU01000051
Actinomycetota
Mycobacterium sp. 852013-51886_SCH5428379 [LZSU]
362379
362453
+
Met
CAT
[ENA]
¡û
>W1711430531
MIJD01000027
Actinomycetota
Mycolicibacterium diernhoferi [MIJD]
19179
19105
-
Met
CAT
[ENA]
¡û
>W131055274
ANBI01000107
Actinomycetota
Mycolicibacterium neoaurum VKM Ac-1815D [ANBI]
80249
80323
+
Met
CAT
[ENA]
¡û
>W131092041
AOHQ01000118
Actinomycetota
Mycobacterium sp. VKM Ac-1816D [AOHQ]
149
75
-
Met
CAT
[ENA]
¡û
>W131252585
CBMO010000145
Actinomycetota
Mycolicibacterium septicum DSM 44393 [CBMO]
23867
23941
+
Met
CAT
[ENA]
¡û
>W1711627832
MPNS01000001
Actinomycetota
Mycolicibacterium diernhoferi [MPNS]
529193
529267
+
Met
CAT
[ENA]
¡û
>W1711749242
MUMI01000499
Actinomycetota
Amycolatopsis kentuckyensis [MUMI]
396
320
-
Met
CAT
[ENA]
¡û
>W1711749340
MUMK01000251
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
15716
15642
-
Met
CAT
[ENA]
¡û
>W131100445
AOUO01000024
Actinomycetota
Amycolatopsis vancoresmycina DSM 44592 [AOUO]
249
175
-
Met
CAT
[ENA]
¡û
>W131165098
ARBH01000007
Actinomycetota
Amycolatopsis balhimycina FH 1894 [ARBH]
3685417
3685493
+
Met
CAT
[ENA]
¡û
>W131186179
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
187989
187913
-
Met
CAT
[ENA]
¡û
>C013517
CP000656
Actinomycetota
Mycolicibacterium gilvum PYR-GCK [CP000656]
2878324
2878397
+
Met
CAT
[Ensembl]
¡û
>W141089915
AUWP01000147
Actinomycetota
Mycobacterium sp. UM_RHS [AUWP]
100
24
-
Met
CAT
[ENA]
¡û
>W141090085
AUWT01000017
Actinomycetota
Mycolicibacterium iranicum UM_TJL [AUWT]
105787
105861
+
Met
CAT
[ENA]
¡û
>W141261857
CCBB010000001
Actinomycetota
Mycolicibacterium cosmeticum [CCBB]
420129
420053
-
Met
CAT
[ENA]
¡û
>W141264011
CCDR010000007
Actinomycetota
Mycolicibacterium neoaurum [CCDR]
50869
50795
-
Met
CAT
[ENA]
¡û
>W141278076
JAFB01000028
Actinomycetota
Amycolatopsis taiwanensis DSM 45107 [JAFB]
130016
130092
+
Met
CAT
[ENA]
¡û
>WENV170554520
CXWK01075606
[CXWK] wastewater metagenome; activated sludge
307
383
+
Met
CAT
[ENA]
¢þ
>C181200098
CP031414
Actinomycetota
Mycolicibacterium neoaurum HGMS2 [CP031414]
1439424
1439498
+
Met
CAT
-
¡û
>W141564592
JIAW01000025
Actinomycetota
Mycobacterium sp. URHB0044 [JIAW]
99926
99852
-
Met
CAT
[ENA]
¡û
>W141695416
JMDW01000005
Actinomycetota
Mycolicibacterium neoaurum ATCC 25795 [JMDW]
38196
38122
-
Met
CAT
[ENA]
¡û
>W141712014
JMQG01000074
Actinomycetota
Amycolatopsis mediterranei [JMQG]
166514
166588
+
Met
CAT
[ENA]
¡û
>W141712101
JMQI01000005
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
29489
29565
+
Met
CAT
[ENA]
¡û
>W141712168
JMQJ01000034
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
166510
166584
+
Met
CAT
[ENA]
¡û
>W141758935
JNYY01000014
Actinomycetota
Amycolatopsis vancoresmycina [JNYY]
7611
7537
-
Met
CAT
[ENA]
¡û
>W141818774
JQLT01000004
Actinomycetota
Mycobacterium sp. UNCCL9 [JQLT]
15083
15009
-
Met
CAT
[ENA]
¡û
>W09105254
AAPA01000003
Actinomycetota
Mycolicibacterium gilvum PYR-GCK [AAPA]
91747
91821
+
Met
CAT
[ENA]
¡û
>C141001881
CP003777
Actinomycetota
Amycolatopsis mediterranei RB [CP003777]
7063595
7063669
+
Met
CAT
[Ensembl]
¡û
>C141010709
CP006936
Actinomycetota
Mycolicibacterium neoaurum VKM Ac-1815D [CP006936]
3884501
3884427
-
Met
CAT
-
¡û
>W1911075233
NMUL01000009
Actinomycetota
Amycolatopsis vastitatis H5 [NMUL]
77268
77342
+
Met
CAT
[ENA]
¡û
>W1911385667
NVQD01000001
Actinomycetota
Mycobacterium sp. PYR10 [NVQD]
1864991
1865065
+
Met
CAT
[ENA]
¡û
>W1810052807
PDCR01000037
Actinomycetota
Mycolicibacterium diernhoferi IP141170001 [PDCR]
36239
36313
+
Met
CAT
[ENA]
¡û
>W1810237602
PPHF01000005
Actinomycetota
Amycolatopsis sp. CA-126428 [PPHF]
286
212
-
Met
CAT
[ENA]
¡û
>W1810237653
PPHG01000009
Actinomycetota
Amycolatopsis sp. CA-128772 [PPHG]
33114
33188
+
Met
CAT
[ENA]
¡û
>C10100517
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
7053694
7053768
+
Met
CAT
[Ensembl]
¡û
>C11100908
CP002896
Actinomycetota
Amycolatopsis mediterranei S699 [CP002896]
7053738
7053812
+
Met
CAT
-
¡û
>W1511519186
JXYZ01000010
Actinomycetota
Mycolicibacterium neoaurum MN4 [JXYZ]
11015
10941
-
Met
CAT
[ENA]
¡û
>C121015469
CP003729
Actinomycetota
Amycolatopsis mediterranei S699 [CP003729]
7063663
7063737
+
Met
CAT
-
¡û
>C161089617
CP015596
Actinomycetota
Mycobacterium adipatum YC-RL4 [CP015596]
2726676
2726750
+
Met
CAT
[Ensembl]
¡û
>W1610070014
BCSY01000029
Actinomycetota
Mycolicibacterium canariasense [BCSY]
354
280
-
Met
CAT
[ENA]
¡û
>W1610582206
LBEW01000194
Actinomycetota
Mycobacterium sp. UM_NYF [LBEW]
976
1052
+
Met
CAT
[ENA]
¡û
>W1610730733
LMJA01000030
Actinomycetota
Mycobacterium sp. Root265 [LMJA]
420103
420177
+
Met
CAT
[ENA]
¡û
>W1610855555
LQMX01000010
Actinomycetota
Mycolicibacterium neoaurum [LQMX]
180337
180411
+
Met
CAT
[ENA]
¡û
>W1610981879
LWCS01000085
Actinomycetota
Mycolicibacterium iranicum [LWCS]
2901
2827
-
Met
CAT
[ENA]
¡û
>W1611043664
LZSU01000051
Actinomycetota
Mycobacterium sp. 852013-51886_SCH5428379 [LZSU]
362379
362453
+
Met
CAT
[ENA]
¡û
>W1710067387
BCSY01000029
Actinomycetota
Mycolicibacterium canariasense [BCSY]
354
280
-
Met
CAT
[ENA]
¡û
>W1710505850
FMUB01000001
Actinomycetota
Mycolicibacterium fluoranthenivorans UNC267MFSha1.1M11 [FMUB]
605799
605875
+
Met
CAT
[ENA]
¡û
>W1710535473
FNSO01000004
Actinomycetota
Amycolatopsis tolypomycina [FNSO]
5600865
5600941
+
Met
CAT
[ENA]
¡û
>W1710538219
FNUJ01000006
Actinomycetota
Amycolatopsis pretoriensis [FNUJ]
348649
348723
+
Met
CAT
[ENA]
¡û
>W1710580374
FPJG01000006
Actinomycetota
Amycolatopsis australiensis [FPJG]
3980864
3980788
-
Met
CAT
[ENA]
¡û
>W1710628088
JPRA01000042
Actinomycetota
Amycolatopsis mediterranei [JPRA]
39590
39664
+
Met
CAT
[ENA]
¡û
>W1710701218
LBEW01000194
Actinomycetota
Mycobacterium sp. UM_NYF [LBEW]
976
1052
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK