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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184641 (21 seq.)
>W131099659
AOTL01000008
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
24276
24200
-
Pro
GGG
[ENA]
¡û
>W131175731
ARJM01000048
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
140169
140245
+
Pro
GGG
[ENA]
¡û
>W131186003
ARVS01000001
Gammaproteobacteria
Methylobacter marinus A45 [ARVS]
808636
808560
-
Pro
GGG
[ENA]
¡û
>W1711333332
MBPP01000021
Gammaproteobacteria
Marinobacter sp. AC-23 [MBPP]
29050
29126
+
Pro
GGG
[ENA]
¡û
>W131034019
AJGP01000003
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [AJGP]
106037
106113
+
Pro
GGG
[ENA]
¡û
>WENV181144842
OEHO01108881
[OEHO] metagenome; unknown
55
131
+
Pro
GGG
[ENA]
¢þ
>WENV181322422
OFKR01006557
[OFKR] marine metagenome; sea ice
180
256
+
Pro
GGG
[ENA]
¢þ
>W141187089
AYLO01000040
Gammaproteobacteria
Methyloglobulus morosus KoM1 [AYLO]
45653
45729
+
Pro
GGG
[ENA]
¡û
>WENV170962617
MRWF01021839
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
104717
104641
-
Pro
GGG
[ENA]
¢þ
>C191027182
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
2228437
2228513
+
Pro
GGG
-
¡û
>C191143426
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
1638089
1638165
+
Pro
GGG
-
¡û
>W141817434
JQKS01000004
Gammaproteobacteria
Methylobacter sp. BBA5.1 [JQKS]
202409
202333
-
Pro
GGG
[ENA]
¡û
>W141821710
JQNS01000005
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
1403184
1403260
+
Pro
GGG
[ENA]
¡û
>W1911283870
NTLB01000004
Gammaproteobacteria
Mangrovitalea sediminis M11-4 [NTLB]
197233
197157
-
Pro
GGG
[ENA]
¡û
>W1911424827
NXGV01000003
Gammaproteobacteria
Marinobacter sp. ANT_B65 [NXGV]
166609
166685
+
Pro
GGG
[ENA]
¡û
>C151006549
CP004387
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [CP004387]
2302619
2302543
-
Pro
GGG
[Ensembl]
¡û
>C151097989
FO082060
Gammaproteobacteria
Methylotuvimicrobium alcaliphilum 20Z [FO082060]
1009065
1009141
+
Pro
GGG
[Ensembl]
¡û
>C161091192
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
3839033
3838957
-
Pro
GGG
[Ensembl]
¡û
>W1610062702
BCNS01000103
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
45944
46020
+
Pro
GGG
[ENA]
¡û
>W1710060178
BCNS01000103
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
45944
46020
+
Pro
GGG
[ENA]
¡û
>W1710590020
FRAQ01000004
Gammaproteobacteria
Marinobacter antarcticus [FRAQ]
134133
134057
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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