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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184691 (84 seq.)
>W1711054815
LRUC01000018
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
190289
190213
-
His
GTG
[ENA]
¡û
>W1711124595
LUKH01000011
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
29476
29400
-
His
GTG
[ENA]
¡û
>W1711126418
LUOO01000053
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
23879
23803
-
His
GTG
[ENA]
¡û
>W1711126442
LUOP01000001
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
1080787
1080711
-
His
GTG
[ENA]
¡û
>W1711175245
LWEQ01000105
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
2433
2509
+
His
GTG
[ENA]
¡û
>W1711175694
LWEX01000430
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
13614
13538
-
His
GTG
[ENA]
¡û
>W1711177830
LWGH01000275
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
2278
2202
-
His
GTG
[ENA]
¡û
>W1711704495
MSPP01000001
Alphaproteobacteria
Marivivens niveibacter MCCC 1A06712 [MSPP]
466337
466413
+
His
GTG
[ENA]
¡û
>C171092118
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
1929063
1928987
-
His
GTG
-
¡û
>w023719
AAYC01000005
Alphaproteobacteria
Roseobacter sp. SK209-2-6 [AAYC]
20593
20515
-
His
GTG
[ENA]
¡û
>w023622
AAYA01000003
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
128731
128809
+
His
GTG
[ENA]
¡û
>w020863
AAVE01000004
Alphaproteobacteria
Dinoroseobacter shibae DFL 12 [AAVE]
386837
386915
+
His
GTG
[ENA]
¡û
>WENV180105610
OAPD01117805
[OAPD] marine metagenome; 2010
150
226
+
His
GTG
[ENA]
¢þ
>W141043745
AMGO01000001
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
75784
75860
+
His
GTG
[ENA]
¡û
>W141142899
AWRV01000161
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
5390
5314
-
His
GTG
[ENA]
¡û
>W141151607
AXBE01000004
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
1149448
1149372
-
His
GTG
[ENA]
¡û
>C08004171
CP000830
Alphaproteobacteria
Dinoroseobacter shibae DFL 12 = DSM 16493 [CP000830]
785598
785674
+
His
GTG
[Ensembl]
¡û
>WENV182547446
OJBS01006509
[OJBS] seawater metagenome; Sea water
274
350
+
His
GTG
[ENA]
¢þ
>WENV182585319
OJHH01008281
[OJHH] seawater metagenome; Sea water
1733
1809
+
His
GTG
[ENA]
¢þ
>WENV183749482
PPFU01175148
[PPFU] hypolithon metagenome; Antarctic Hypolithon
215
291
+
His
GTG
[ENA]
¢þ
>WENV170016105
AZIJ01012708
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
108
32
-
His
GTG
[ENA]
¢þ
>WENV170727341
LULE01000002
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
1006891
1006815
-
His
GTG
[ENA]
¢þ
>WENV170739265
LULQ01000074
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
23879
23803
-
His
GTG
[ENA]
¢þ
>WENV170759386
LUMS01017284
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
662
738
+
His
GTG
[ENA]
¢þ
>WENV170816244
MDSX01026814
[MDSX] marine metagenome; seawater
2695
2619
-
His
GTG
[ENA]
¢þ
>W141464082
JFKE01000004
Alphaproteobacteria
Actibacterium mucosum KCTC 23349 [JFKE]
40984
40908
-
His
GTG
[ENA]
¡û
>C181008454
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
2608768
2608692
-
His
GTG
-
¡û
>C181008823
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
1296980
1297056
+
His
GTG
-
¡û
>C181009199
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
2643020
2642944
-
His
GTG
-
¡û
>C181009943
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
2607602
2607526
-
His
GTG
-
¡û
>C181049002
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
2514304
2514228
-
His
GTG
-
¡û
>C181049059
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
2514304
2514228
-
His
GTG
-
¡û
>C181054561
CP021913
Alphaproteobacteria
Sagittula sp. P11 [CP021913]
3363458
3363534
+
His
GTG
-
¡û
>C181060583
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
3956304
3956380
+
His
GTG
-
¡û
>C191141141
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
2774187
2774111
-
His
GTG
-
¡û
>C191158458
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
1155749
1155825
+
His
GTG
-
¡û
>W09112097
ABXM01000007
Alphaproteobacteria
Ruegeria sp. R11 [ABXM]
164093
164017
-
His
GTG
[ENA]
¡û
>W141813538
JQEY01000001
Alphaproteobacteria
Palleronia rufa MOLA 401 [JQEY]
856060
855984
-
His
GTG
[ENA]
¡û
>W141820547
JQMY01000001
Alphaproteobacteria
Oceanicola sp. MCTG156(1a) [JQMY]
1812327
1812403
+
His
GTG
[ENA]
¡û
>W1910442720
FWFL01000007
Alphaproteobacteria
Roseovarius litorisediminis CECT 8287 [FWFL]
15461
15385
-
His
GTG
[ENA]
¡û
>W1910442937
FWFQ01000008
Alphaproteobacteria
Pseudoruegeria aquimaris CECT 7680 [FWFQ]
86881
86957
+
His
GTG
[ENA]
¡û
>W1910443023
FWFS01000004
Alphaproteobacteria
Aquimixticola soesokkakensis CECT 8620 [FWFS]
164640
164564
-
His
GTG
[ENA]
¡û
>C141008382
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
2499978
2499902
-
His
GTG
[Ensembl]
¡û
>C141011206
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
2608634
2608558
-
His
GTG
[Ensembl]
¡û
>W1910499005
FXXP01000001
Alphaproteobacteria
Pelagimonas phthalicica CECT 8649 [FXXP]
1822650
1822726
+
His
GTG
[ENA]
¡û
>W1911237188
NSBT01000037
Alphaproteobacteria
Actibacterium ureilyticum LS-811 [NSBT]
527672
527596
-
His
GTG
[ENA]
¡û
>W1911237245
NSBU01000007
Alphaproteobacteria
Actibacterium pelagium JN33 [NSBU]
280096
280020
-
His
GTG
[ENA]
¡û
>W1810235328
PPFE01000002
Alphaproteobacteria
Roseovarius confluentis SAG6 [PPFE]
585765
585841
+
His
GTG
[ENA]
¡û
>W1810364956
PVTQ01000004
Alphaproteobacteria
Donghicola tyrosinivorans DSM 100212 [PVTQ]
186246
186322
+
His
GTG
[ENA]
¡û
>W1810476811
QAOH01000008
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
83308
83384
+
His
GTG
[ENA]
¡û
>W1510000297
AQQZ01000001
Alphaproteobacteria
Pseudaestuariivita atlantica 22II-S11-z3 [AQQZ]
294268
294344
+
His
GTG
[ENA]
¡û
>W1510650454
CVQZ01000028
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVQZ]
89746
89822
+
His
GTG
[ENA]
¡û
>W1510650713
CVRL01000005
Alphaproteobacteria
Phaeobacter italicus CECT 7321 [CVRL]
4032
3956
-
His
GTG
[ENA]
¡û
>W1510650758
CVRM01000003
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVRM]
89746
89822
+
His
GTG
[ENA]
¡û
>W1511483026
JWLL01000016
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
55457
55533
+
His
GTG
[ENA]
¡û
>W1511583822
LAUK01000012
Alphaproteobacteria
Nautella sp. ECSMB14104 [LAUK]
4006
3930
-
His
GTG
[ENA]
¡û
>W1610016158
AOQA01000007
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
685464
685388
-
His
GTG
[ENA]
¡û
>W1610091944
CXPG01000012
Alphaproteobacteria
Jannaschia rubra [CXPG]
92520
92444
-
His
GTG
[ENA]
¡û
>W1610092855
CYSD01000012
Alphaproteobacteria
Tritonibacter multivorans [CYSD]
7398
7322
-
His
GTG
[ENA]
¡û
>W1610092899
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
656813
656889
+
His
GTG
[ENA]
¡û
>W1610578334
LAXJ01000008
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
203749
203825
+
His
GTG
[ENA]
¡û
>W1610895861
LRUC01000018
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
190289
190213
-
His
GTG
[ENA]
¡û
>W1610935567
LUKH01000011
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
29476
29400
-
His
GTG
[ENA]
¡û
>W1610937351
LUOO01000053
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
23879
23803
-
His
GTG
[ENA]
¡û
>W1610937375
LUOP01000001
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
1080787
1080711
-
His
GTG
[ENA]
¡û
>W1610983558
LWEQ01000105
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
2433
2509
+
His
GTG
[ENA]
¡û
>W1610984007
LWEX01000430
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
13614
13538
-
His
GTG
[ENA]
¡û
>W1610986143
LWGH01000275
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
2278
2202
-
His
GTG
[ENA]
¡û
>W1710013049
AOQA01000007
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
685464
685388
-
His
GTG
[ENA]
¡û
>W1710095301
CXPG01000012
Alphaproteobacteria
Jannaschia rubra [CXPG]
92520
92444
-
His
GTG
[ENA]
¡û
>W1710096110
CYSD01000012
Alphaproteobacteria
Tritonibacter multivorans [CYSD]
7398
7322
-
His
GTG
[ENA]
¡û
>W1710096154
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
656813
656889
+
His
GTG
[ENA]
¡û
>W1710531940
FNPX01000039
Alphaproteobacteria
Jannaschia faecimaris [FNPX]
2858
2782
-
His
GTG
[ENA]
¡û
>W1710543073
FNZQ01000001
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
1375469
1375545
+
His
GTG
[ENA]
¡û
>W1710546883
FOCM01000008
Alphaproteobacteria
Palleronia pelagia pelagius [FOCM]
134526
134602
+
His
GTG
[ENA]
¡û
>W1710558723
FOMC01000009
Alphaproteobacteria
Tritonibacter multivorans [FOMC]
106756
106832
+
His
GTG
[ENA]
¡û
>W1710562123
FOOS01000004
Alphaproteobacteria
Jannaschia rubra [FOOS]
250355
250431
+
His
GTG
[ENA]
¡û
>W1710562499
FOOZ01000013
Alphaproteobacteria
Phaeobacter italicus italica [FOOZ]
4407
4331
-
His
GTG
[ENA]
¡û
>W1710565155
FORA01000002
Alphaproteobacteria
Jannaschia pohangensis [FORA]
42653
42577
-
His
GTG
[ENA]
¡û
>W1710565541
FORH01000001
Alphaproteobacteria
Celeribacter neptunius [FORH]
95598
95674
+
His
GTG
[ENA]
¡û
>W1710585643
FQWM01000007
Alphaproteobacteria
Cognatishimia maritima maritimus [FQWM]
145531
145607
+
His
GTG
[ENA]
¡û
>W1710588031
FQZA01000009
Alphaproteobacteria
Palleronia salina salinus [FQZA]
103927
104003
+
His
GTG
[ENA]
¡û
>W1710606556
FWXX01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [FWXX]
242036
241960
-
His
GTG
[ENA]
¡û
>W1710697207
LAXJ01000008
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
203749
203825
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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