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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184697 (21 seq.)
>W1710893512
LNEV01000009
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
142543
142619
+
Asp
GTC
[ENA]
¡û
>W1711502664
MKSX01000014
Alphaproteobacteria
Alphaproteobacteria bacterium 33-17 [MKSX]
243
167
-
Asp
GTC
[ENA]
¡û
>W131175670
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
1065258
1065334
+
Asp
GTC
[ENA]
¡û
>WENV180020773
FTDB01001373
[FTDB] metagenome; soil
3342
3418
+
Asp
GTC
[ENA]
¢þ
>WENV180020812
FTDB01002275
[FTDB] metagenome; soil
2561
2637
+
Asp
GTC
[ENA]
¢þ
>WENV180027871
FTIZ01191782
[FTIZ] metagenome; soil
2104
2180
+
Asp
GTC
[ENA]
¢þ
>C08000336
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
1846897
1846824
-
Asp
GTC
[Ensembl]
¡û
>W141260977
CCAO010000084
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
127368
127444
+
Asp
GTC
[ENA]
¡û
>WENV183685697
ORMF010886468
[ORMF] groundwater metagenome; groundwater
394
318
-
Asp
GTC
[ENA]
¢þ
>WENV170709016
LNFM01000069
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
288262
288186
-
Asp
GTC
[ENA]
¢þ
>WENV170710470
LNFM01001835
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16612
16688
+
Asp
GTC
[ENA]
¢þ
>C191005707
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
1001611
1001535
-
Asp
GTC
-
¡û
>W141814334
JQGB01000093
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
2212
2288
+
Asp
GTC
[ENA]
¡û
>W1911653504
QDFX01000002
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
197279
197203
-
Asp
GTC
[ENA]
¡û
>C151040670
CP008941
Alphaproteobacteria
Candidatus Paracaedibacter acanthamoebae [CP008941]
874086
874162
+
Asp
GTC
[Ensembl]
¡û
>C151079196
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
1489038
1488962
-
Asp
GTC
[Ensembl]
¡û
>W1511569460
LAJY01000577
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
795
719
-
Asp
GTC
[ENA]
¡û
>C161108398
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
3593110
3593034
-
Asp
GTC
-
¡û
>W1610753778
LNEV01000009
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
142543
142619
+
Asp
GTC
[ENA]
¡û
>W1710540194
FNWO01000004
Alphaproteobacteria
Magnetospirillum fulvum [FNWO]
239051
238975
-
Asp
GTC
[ENA]
¡û
>W1710593753
FRXO01000001
Alphaproteobacteria
Pseudoxanthobacter soli DSM 19599 [FRXO]
220724
220800
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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