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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184732 (23 seq.)
>W1710892737
LNEB01000008
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
93733
93657
-
Asp
GTC
[ENA]
¡û
>W1711124494
LUKD01000008
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
424454
424530
+
Asp
GTC
[ENA]
¡û
>W1711124529
LUKE01000005
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
110032
109956
-
Asp
GTC
[ENA]
¡û
>W1711124541
LUKF01000003
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
130511
130435
-
Asp
GTC
[ENA]
¡û
>W1712010625
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
186946
187022
+
Asp
GTC
[ENA]
¡û
>C001966
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
1274601
1274677
+
Asp
GTC
[Ensembl]
¡û
>WENV181167344
OEIU01020657
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1593
1517
-
Asp
GTC
[ENA]
¢þ
>WENV181172953
OEIV011097918
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
87
163
+
Asp
GTC
[ENA]
¢þ
>WENV181844827
OGVW01036908
[OGVW] freshwater metagenome; freshwater
177
253
+
Asp
GTC
[ENA]
¢þ
>WENV170576998
FRDC01002616
[FRDC] freshwater metagenome; water
79165
79241
+
Asp
GTC
[ENA]
¢þ
>WENV170709226
LNFM01000202
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
78873
78797
-
Asp
GTC
[ENA]
¢þ
>C181047786
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
2517492
2517416
-
Asp
GTC
-
¡û
>W1910698866
MEPU01000007
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29 [MEPU]
252059
252135
+
Asp
GTC
[ENA]
¡û
>W1910698910
MEPV01000026
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_02_FULL_40_15 [MEPV]
153
77
-
Asp
GTC
[ENA]
¡û
>C151003355
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
964183
964259
+
Asp
GTC
[Ensembl]
¡û
>C151031134
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
3438385
3438461
+
Asp
GTC
[Ensembl]
¡û
>C151087480
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
1247358
1247434
+
Asp
GTC
-
¡û
>W1511399676
JTEV01000024
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
11944
12020
+
Asp
GTC
[ENA]
¡û
>C131001654
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
1398731
1398807
+
Asp
GTC
[Ensembl]
¡û
>W1610753003
LNEB01000008
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
93733
93657
-
Asp
GTC
[ENA]
¡û
>W1610935434
LUKD01000008
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
424454
424530
+
Asp
GTC
[ENA]
¡û
>W1610935469
LUKE01000005
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
110032
109956
-
Asp
GTC
[ENA]
¡û
>W1610935481
LUKF01000003
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
130511
130435
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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