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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184758 (38 seq.)
>W1710867350
LMIE01000033
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
192803
192887
+
Leu
CAG
[ENA]
¡û
>W1711394804
MERS01000004
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
43680
43764
+
Leu
CAG
[ENA]
¡û
>W1711394871
MERT01000028
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
43727
43811
+
Leu
CAG
[ENA]
¡û
>W1711503053
MKTG01000092
Betaproteobacteria
Burkholderiales bacterium 68-10 [MKTG]
53597
53513
-
Leu
CAG
[ENA]
¡û
>W1711751713
MUNZ01000085
Betaproteobacteria
Hydrogenophaga sp. A37 [MUNZ]
131934
132018
+
Leu
CAG
[ENA]
¡û
>C171049777
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
2078986
2079070
+
Leu
CAG
-
¡û
>WENV180097765
MTBK01209845
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
797
881
+
Leu
CAG
[ENA]
¢þ
>WENV180285823
OBID01743420
[OBID] metagenome; sludge
219
135
-
Leu
CAG
[ENA]
¢þ
>WENV181170379
OEIV010042352
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
10
94
+
Leu
CAG
[ENA]
¢þ
>WENV181369578
OFQP01009018
[OFQP] freshwater metagenome; Freshwater Lake
377
461
+
Leu
CAG
[ENA]
¢þ
>WENV181415703
OGCL01019979
[OGCL] hot springs metagenome; Hot spring water
98
182
+
Leu
CAG
[ENA]
¢þ
>W141214297
AZSO01000401
Betaproteobacteria
Hydrogenophaga sp. T4 [AZSO]
433
349
-
Leu
CAG
[ENA]
¡û
>W141234416
BAWN01000020
Betaproteobacteria
Serpentinimonas barnesii H1 [BAWN]
10245
10161
-
Leu
CAG
[ENA]
¡û
>WENV170010874
APMI01032665
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
544
460
-
Leu
CAG
[ENA]
¢þ
>WENV170018677
BBPD01000331
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
11061
10977
-
Leu
CAG
[ENA]
¢þ
>WENV170019096
BBPD01003774
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
5711
5627
-
Leu
CAG
[ENA]
¢þ
>WENV170651317
JRYF01006498
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
889
805
-
Leu
CAG
[ENA]
¢þ
>WENV170651337
JRYF01007293
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
2164
2248
+
Leu
CAG
[ENA]
¢þ
>WENV170651338
JRYF01007296
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
5197
5281
+
Leu
CAG
[ENA]
¢þ
>WENV170651533
JRYF01054201
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
309
393
+
Leu
CAG
[ENA]
¢þ
>WENV170654494
JRYL01000069
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
35531
35615
+
Leu
CAG
[ENA]
¢þ
>C181158485
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
3186419
3186335
-
Leu
CAG
-
¡û
>C181158486
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
3186162
3186078
-
Leu
CAG
-
¡û
>C181159983
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
2537050
2537134
+
Leu
CAG
-
¡û
>C181159984
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
2537287
2537371
+
Leu
CAG
-
¡û
>W1910700114
MESF01000038
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_66_35 [MESF]
15540
15456
-
Leu
CAG
[ENA]
¡û
>W1911398042
NWMV01000003
Betaproteobacteria
Macromonas nakdongensis BK-30 [NWMV]
25404
25320
-
Leu
CAG
[ENA]
¡û
>W1911398043
NWMV01000003
Betaproteobacteria
Macromonas nakdongensis BK-30 [NWMV]
25162
25078
-
Leu
CAG
[ENA]
¡û
>W1810609626
QGUB01000001
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
459631
459547
-
Leu
CAG
[ENA]
¡û
>W1810609627
QGUB01000001
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
459380
459296
-
Leu
CAG
[ENA]
¡û
>C151002118
AP014568
Betaproteobacteria
Serpentinimonas raichei A1 [AP014568]
747673
747589
-
Leu
CAG
[Ensembl]
¡û
>C151002137
AP014569
Betaproteobacteria
Serpentinimonas maccroryi B1 [AP014569]
1440170
1440254
+
Leu
CAG
[Ensembl]
¡û
>W1511429840
JUEA01000009
Betaproteobacteria
Comamonadaceae bacterium BICA1-1 [JUEA]
79656
79572
-
Leu
CAG
[ENA]
¡û
>W121108915
ALEE01000376
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
2668
2752
+
Leu
CAG
[ENA]
¡û
>W121108916
ALEE01000377
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
128
212
+
Leu
CAG
[ENA]
¡û
>W1610729696
LMIE01000033
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
192803
192887
+
Leu
CAG
[ENA]
¡û
>W1710523002
FNHP01000009
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
83953
83869
-
Leu
CAG
[ENA]
¡û
>W1710523003
FNHP01000009
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
83695
83611
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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