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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184784 (119 seq.)
>W1710791196
LJNL01000018
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_15 [LJNL]
4913
4989
+
Pro
TGG
[ENA]
¡û
>W1711090621
LTAV01000056
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
81
157
+
Pro
TGG
[ENA]
¡û
>W1711090671
LTAW01000011
Gammaproteobacteria
Marinomonas atlantica [LTAW]
274
198
-
Pro
TGG
[ENA]
¡û
>W1711090698
LTAW01000032
Gammaproteobacteria
Marinomonas atlantica [LTAW]
287
211
-
Pro
TGG
[ENA]
¡û
>W1711090769
LTAX01000065
Gammaproteobacteria
Marinomonas gallaica [LTAX]
2
78
+
Pro
TGG
[ENA]
¡û
>W1711090772
LTAX01000073
Gammaproteobacteria
Marinomonas gallaica [LTAX]
2
78
+
Pro
TGG
[ENA]
¡û
>W1711176108
LWFE01000036
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
21975
22051
+
Pro
TGG
[ENA]
¡û
>W1711177587
LWGC01001530
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
4198
4122
-
Pro
TGG
[ENA]
¡û
>W1711177594
LWGC01001739
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
23791
23867
+
Pro
TGG
[ENA]
¡û
>W1711309690
MARB01000005
Gammaproteobacteria
Candidatus Thiodiazotropha endolucinida [MARB]
101760
101836
+
Pro
TGG
[ENA]
¡û
>W1712081290
NHNK01000006
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
583
507
-
Pro
TGG
[ENA]
¡û
>W131169629
AREW01000005
Gammaproteobacteria
Endozoicomonas elysicola DSM 22380 [AREW]
467873
467797
-
Pro
TGG
[ENA]
¡û
>W131169648
AREW01000011
Gammaproteobacteria
Endozoicomonas elysicola DSM 22380 [AREW]
79496
79420
-
Pro
TGG
[ENA]
¡û
>W131169650
AREW01000011
Gammaproteobacteria
Endozoicomonas elysicola DSM 22380 [AREW]
49004
48928
-
Pro
TGG
[ENA]
¡û
>W131169651
AREW01000011
Gammaproteobacteria
Endozoicomonas elysicola DSM 22380 [AREW]
48171
48095
-
Pro
TGG
[ENA]
¡û
>W131221131
AUAF01000001
Gammaproteobacteria
Zooshikella ganghwensis DSM 15267 [AUAF]
113014
112938
-
Pro
TGG
[ENA]
¡û
>C012964
CP000514
Gammaproteobacteria
Marinobacter nauticus VT8 [CP000514]
2055474
2055398
-
Pro
TGG
[Ensembl]
¡û
>C013019
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4267650
4267574
-
Pro
TGG
[Ensembl]
¡û
>WENV180066177
MPLY02114127
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
274
198
-
Pro
TGG
[ENA]
¢þ
>WENV180115641
OAPT01014951
[OAPT] marine metagenome; seawater
455
379
-
Pro
TGG
[ENA]
¢þ
>WENV180383889
OBOV01061438
[OBOV] marine metagenome; ENV:00002010
65
141
+
Pro
TGG
[ENA]
¢þ
>WENV180390454
OBPK01166864
[OBPK] marine metagenome; Sterile flask
267
191
-
Pro
TGG
[ENA]
¢þ
>WENV180399013
OBQE01015082
[OBQE] marine metagenome; ENVO.00002150
349
273
-
Pro
TGG
[ENA]
¢þ
>WENV180595238
OCPB01052815
[OCPB] marine metagenome; ENVO:00002149
182
106
-
Pro
TGG
[ENA]
¢þ
>W141191384
AYOZ01000007
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
663
587
-
Pro
TGG
[ENA]
¡û
>W141191388
AYOZ01000007
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
280
204
-
Pro
TGG
[ENA]
¡û
>WENV182552090
OJCJ01006241
[OJCJ] seawater metagenome; Sea water
1119
1043
-
Pro
TGG
[ENA]
¢þ
>WENV182560110
OJDS01053099
[OJDS] seawater metagenome; Sea water
454
378
-
Pro
TGG
[ENA]
¢þ
>WENV182592920
OJIS01001218
[OJIS] seawater metagenome; Sea water
2
78
+
Pro
TGG
[ENA]
¢þ
>W141284667
JAMB01000001
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
736444
736520
+
Pro
TGG
[ENA]
¡û
>W141284686
JAMB01000010
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
114
190
+
Pro
TGG
[ENA]
¡û
>W141284690
JAMB01000010
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
497
573
+
Pro
TGG
[ENA]
¡û
>WENV183618479
OOFO01002525
[OOFO] marine metagenome; seawater
726
802
+
Pro
TGG
[ENA]
¢þ
>WENV183618904
OOFP01003301
[OOFP] marine metagenome; seawater
97
173
+
Pro
TGG
[ENA]
¢þ
>WENV183637287
OPGP01010840
[OPGP] human gut metagenome; Material from the ethmoid
337
413
+
Pro
TGG
[ENA]
¢þ
>WENV170016380
AZIK01001940
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
2650
2574
-
Pro
TGG
[ENA]
¢þ
>WENV170305343
CESI01137907
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
319
395
+
Pro
TGG
[ENA]
¢þ
>WENV170345419
CETF01005828
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5357
5281
-
Pro
TGG
[ENA]
¢þ
>WENV170780535
MAAB01004756
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6298
6374
+
Pro
TGG
[ENA]
¢þ
>WENV170780539
MAAB01004756
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6710
6786
+
Pro
TGG
[ENA]
¢þ
>WENV170921674
MDTG01018438
[MDTG] marine metagenome; seawater
5368
5444
+
Pro
TGG
[ENA]
¢þ
>WENV170938734
MDTG01313921
[MDTG] marine metagenome; seawater
26519
26443
-
Pro
TGG
[ENA]
¢þ
>WENV170940932
MDTG01351782
[MDTG] marine metagenome; seawater
15940
16016
+
Pro
TGG
[ENA]
¢þ
>WENV170944180
MDTG01409642
[MDTG] marine metagenome; seawater
3400
3324
-
Pro
TGG
[ENA]
¢þ
>C191039813
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3290216
3290140
-
Pro
TGG
-
¡û
>C191039817
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3289836
3289760
-
Pro
TGG
-
¡û
>W09106488
AAVH01000052
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
1905
1829
-
Pro
TGG
[ENA]
¡û
>W09106492
AAVH01000052
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
1525
1449
-
Pro
TGG
[ENA]
¡û
>W1910584825
JYBL01000006
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
661
585
-
Pro
TGG
[ENA]
¡û
>W1910584829
JYBL01000006
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
274
198
-
Pro
TGG
[ENA]
¡û
>W1910914876
NHTT01000007
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
211959
212035
+
Pro
TGG
[ENA]
¡û
>W1910914880
NHTT01000007
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
212346
212422
+
Pro
TGG
[ENA]
¡û
>W1810606219
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
160716
160792
+
Pro
TGG
[ENA]
¡û
>W1810606223
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
161104
161180
+
Pro
TGG
[ENA]
¡û
>W1810625246
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
58436
58512
+
Pro
TGG
[ENA]
¡û
>W1810625250
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
58823
58899
+
Pro
TGG
[ENA]
¡û
>W1810625254
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
59210
59286
+
Pro
TGG
[ENA]
¡û
>W1810625258
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
59597
59673
+
Pro
TGG
[ENA]
¡û
>W1810676271
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
79170
79246
+
Pro
TGG
[ENA]
¡û
>W1810676275
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
79550
79626
+
Pro
TGG
[ENA]
¡û
>W1810679685
QKRA01000015
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
19509
19433
-
Pro
TGG
[ENA]
¡û
>W1810679689
QKRA01000015
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
19125
19049
-
Pro
TGG
[ENA]
¡û
>W1810720352
QNRF01000009
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
55054
54978
-
Pro
TGG
[ENA]
¡û
>W1810720356
QNRF01000009
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
54673
54597
-
Pro
TGG
[ENA]
¡û
>W1810720357
QNRF01000009
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
54478
54402
-
Pro
TGG
[ENA]
¡û
>W1810721696
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
132439
132363
-
Pro
TGG
[ENA]
¡û
>W1810721700
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
132056
131980
-
Pro
TGG
[ENA]
¡û
>W1810759715
QPJQ01000024
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
34261
34185
-
Pro
TGG
[ENA]
¡û
>W1810759719
QPJQ01000024
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
33881
33805
-
Pro
TGG
[ENA]
¡û
>W1810759720
QPJQ01000024
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
33686
33610
-
Pro
TGG
[ENA]
¡û
>W1810885372
QUNG01000014
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
14449
14525
+
Pro
TGG
[ENA]
¡û
>W1810885376
QUNG01000014
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
14832
14908
+
Pro
TGG
[ENA]
¡û
>C11114708
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
621770
621694
-
Pro
TGG
[Ensembl]
¡û
>C11114712
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
621388
621312
-
Pro
TGG
[Ensembl]
¡û
>C11114983
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
634811
634887
+
Pro
TGG
[Ensembl]
¡û
>C11114987
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
635194
635270
+
Pro
TGG
[Ensembl]
¡û
>W1511518558
JXYC01000076
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
80
156
+
Pro
TGG
[ENA]
¡û
>W1511677329
LFBU01000001
Gammaproteobacteria
Marinobacter subterrani JG233 [LFBU]
1075284
1075208
-
Pro
TGG
[ENA]
¡û
>W1610503732
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44441
44517
+
Pro
TGG
[ENA]
¡û
>W1610503736
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44823
44899
+
Pro
TGG
[ENA]
¡û
>W1610503823
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
17209
17285
+
Pro
TGG
[ENA]
¡û
>W1610503827
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
17598
17674
+
Pro
TGG
[ENA]
¡û
>W1610504031
FLOE01000020
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
74246
74322
+
Pro
TGG
[ENA]
¡û
>W1610504035
FLOE01000020
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
74628
74704
+
Pro
TGG
[ENA]
¡û
>W1610506617
FLRA01000008
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
47631
47707
+
Pro
TGG
[ENA]
¡û
>W1610506621
FLRA01000008
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
48019
48095
+
Pro
TGG
[ENA]
¡û
>W1610506692
FLRB01000001
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
47631
47707
+
Pro
TGG
[ENA]
¡û
>W1610506696
FLRB01000001
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
48019
48095
+
Pro
TGG
[ENA]
¡û
>W1610540027
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
70335
70259
-
Pro
TGG
[ENA]
¡û
>W1610540031
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
69953
69877
-
Pro
TGG
[ENA]
¡û
>W1610540110
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
71039
70963
-
Pro
TGG
[ENA]
¡û
>W1610540114
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
70627
70551
-
Pro
TGG
[ENA]
¡û
>W1610540118
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
70215
70139
-
Pro
TGG
[ENA]
¡û
>W1610540203
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
71151
71075
-
Pro
TGG
[ENA]
¡û
>W1610540207
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70739
70663
-
Pro
TGG
[ENA]
¡û
>W1610540211
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70327
70251
-
Pro
TGG
[ENA]
¡û
>W1610655121
LJNL01000018
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_15 [LJNL]
4913
4989
+
Pro
TGG
[ENA]
¡û
>W1610924861
LTAV01000056
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
81
157
+
Pro
TGG
[ENA]
¡û
>W1610924911
LTAW01000011
Gammaproteobacteria
Marinomonas atlantica [LTAW]
274
198
-
Pro
TGG
[ENA]
¡û
>W1610924938
LTAW01000032
Gammaproteobacteria
Marinomonas atlantica [LTAW]
287
211
-
Pro
TGG
[ENA]
¡û
>W1610925009
LTAX01000065
Gammaproteobacteria
Marinomonas gallaica [LTAX]
2
78
+
Pro
TGG
[ENA]
¡û
>W1610925012
LTAX01000073
Gammaproteobacteria
Marinomonas gallaica [LTAX]
2
78
+
Pro
TGG
[ENA]
¡û
>W1610984421
LWFE01000036
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
21975
22051
+
Pro
TGG
[ENA]
¡û
>W1610985900
LWGC01001530
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
4198
4122
-
Pro
TGG
[ENA]
¡û
>W1610985907
LWGC01001739
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
23791
23867
+
Pro
TGG
[ENA]
¡û
>W1710496561
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44441
44517
+
Pro
TGG
[ENA]
¡û
>W1710496565
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44823
44899
+
Pro
TGG
[ENA]
¡û
>W1710496652
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
17209
17285
+
Pro
TGG
[ENA]
¡û
>W1710496656
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
17598
17674
+
Pro
TGG
[ENA]
¡û
>W1710560201
FONF01000001
Gammaproteobacteria
Marinobacter sp. DSM 26671 [FONF]
269293
269217
-
Pro
TGG
[ENA]
¡û
>W1710583960
FQVF01000011
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
508
432
-
Pro
TGG
[ENA]
¡û
>W1710643048
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
70335
70259
-
Pro
TGG
[ENA]
¡û
>W1710643052
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
69953
69877
-
Pro
TGG
[ENA]
¡û
>W1710643131
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
71039
70963
-
Pro
TGG
[ENA]
¡û
>W1710643135
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
70627
70551
-
Pro
TGG
[ENA]
¡û
>W1710643139
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
70215
70139
-
Pro
TGG
[ENA]
¡û
>W1710643224
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
71151
71075
-
Pro
TGG
[ENA]
¡û
>W1710643228
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70739
70663
-
Pro
TGG
[ENA]
¡û
>W1710643232
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70327
70251
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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