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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184829 (115 seq.)
>W131066251
ANOK01000006
Bacillota
Calidifontibacillus oryziterrae ZYK [ANOK]
356
431
+
Ile
GAT
[ENA]
¡û
>W1711164205
LVTO01000010
Bacillota
Bacillus badius [LVTO]
1930
2004
+
Ile
GAT
[ENA]
¡û
>W1711164243
LVTO01000026
Bacillota
Bacillus badius [LVTO]
3198
3124
-
Ile
GAT
[ENA]
¡û
>W1711173750
LWDO01000002
Bacillota
Bacillus badius encimensis [LWDO]
1284
1358
+
Ile
GAT
[ENA]
¡û
>W1711173764
LWDO01000006
Bacillota
Bacillus badius encimensis [LWDO]
102557
102483
-
Ile
GAT
[ENA]
¡û
>W1711301756
MAIG01000002
Bacillota
Bacillus badius encimensis [MAIG]
1284
1358
+
Ile
GAT
[ENA]
¡û
>W1711301770
MAIG01000006
Bacillota
Bacillus badius encimensis [MAIG]
102557
102483
-
Ile
GAT
[ENA]
¡û
>W1711318826
MAYT01000001
Bacillota
Bacillus wudalianchiensis FJAT-27215 [MAYT]
1684
1758
+
Ile
GAT
[ENA]
¡û
>W1711318838
MAYT01000005
Bacillota
Bacillus wudalianchiensis FJAT-27215 [MAYT]
204
278
+
Ile
GAT
[ENA]
¡û
>C171126288
CP021920
Bacillota
Bacillus sonorensis SRCM101395 [CP021920]
1150428
1150504
+
Ile
GAT
-
¡û
>C171128911
LT603683
Bacillota
Bacillus glycinifermentans [LT603683]
3514123
3514047
-
Ile
GAT
-
¡û
>W131054073
ANAP01000012
Bacillota
Heyndrickxia coagulans XZL9 [ANAP]
159
235
+
Ile
GAT
[ENA]
¡û
>W131054075
ANAP01000017
Bacillota
Heyndrickxia coagulans XZL9 [ANAP]
276
200
-
Ile
GAT
[ENA]
¡û
>W131054091
ANAP01000080
Bacillota
Heyndrickxia coagulans XZL9 [ANAP]
183
107
-
Ile
GAT
[ENA]
¡û
>W131054192
ANAQ01000211
Bacillota
Heyndrickxia coagulans H-1 [ANAQ]
130
206
+
Ile
GAT
[ENA]
¡û
>W131066247
ANOK01000004
Bacillota
Calidifontibacillus oryziterrae ZYK [ANOK]
268457
268533
+
Ile
GAT
[ENA]
¡û
>W131066275
ANOK01000007
Bacillota
Calidifontibacillus oryziterrae ZYK [ANOK]
113239
113315
+
Ile
GAT
[ENA]
¡û
>W131090065
AOFM01000001
Bacillota
Bacillus sonorensis L12 [AOFM]
4772
4848
+
Ile
GAT
[ENA]
¡û
>W131236772
AUMP01000006
Bacillota
Fictibacillus gelatini DSM 15865 [AUMP]
36580
36504
-
Ile
GAT
[ENA]
¡û
>w022773
AAWV01000222
Bacillota
Heyndrickxia coagulans 36D1 [AAWV]
2369
2445
+
Ile
GAT
[ENA]
¡û
>w022730
AAWV01000003
Bacillota
Heyndrickxia coagulans 36D1 [AAWV]
87868
87944
+
Ile
GAT
[ENA]
¡û
>WENV181495886
OGGC01009380
[OGGC] metagenome; Human gut stool
1375
1299
-
Ile
GAT
[ENA]
¢þ
>WENV181910840
OGYD01000003
[OGYD] human gut metagenome; faeces
139372
139296
-
Ile
GAT
[ENA]
¢þ
>WENV182608952
OJJV01001482
[OJJV] metagenome; faeces
7992
8068
+
Ile
GAT
[ENA]
¢þ
>W141267236
CCNM01000037
Bacillota
Bacillus andreraoultii KW-12 [CCNM]
621
545
-
Ile
GAT
[ENA]
¡û
>W141267267
CCNM01000046
Bacillota
Bacillus andreraoultii KW-12 [CCNM]
1236
1311
+
Ile
GAT
[ENA]
¡û
>W141273047
CCRF01000001
Bacillota
Caldibacillus thermoamylovorans [CCRF]
25947
26024
+
Ile
GAT
[ENA]
¡û
>W141273098
CCRF01000072
Bacillota
Caldibacillus thermoamylovorans [CCRF]
72087
72012
-
Ile
GAT
[ENA]
¡û
>WENV183225765
OLQO01000135
[OLQO] human gut metagenome; faeces
54750
54826
+
Ile
GAT
[ENA]
¢þ
>WENV183760299
PPYE01231000
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
34
110
+
Ile
GAT
[ENA]
¢þ
>C181089001
CP023704
Bacillota
Caldibacillus thermoamylovorans SSBM [CP023704]
14114
14190
+
Ile
GAT
-
¡û
>C181089004
CP023704
Bacillota
Caldibacillus thermoamylovorans SSBM [CP023704]
31956
32032
+
Ile
GAT
-
¡û
>C181089066
CP023704
Bacillota
Caldibacillus thermoamylovorans SSBM [CP023704]
2959742
2959667
-
Ile
GAT
-
¡û
>C181117258
CP025437
Bacillota
Heyndrickxia coagulans LA204 [CP025437]
12379
12455
+
Ile
GAT
-
¡û
>C181117261
CP025437
Bacillota
Heyndrickxia coagulans LA204 [CP025437]
93442
93518
+
Ile
GAT
-
¡û
>C181136913
CP026649
Bacillota
Heyndrickxia coagulans R11 [CP026649]
12394
12470
+
Ile
GAT
-
¡û
>C181136923
CP026649
Bacillota
Heyndrickxia coagulans R11 [CP026649]
98262
98338
+
Ile
GAT
-
¡û
>C191137772
CP035232
Bacillota
Bacillus glycinifermentans SRCM103574 [CP035232]
3539231
3539155
-
Ile
GAT
-
¡û
>C191138642
CP035305
Bacillota
Heyndrickxia coagulans IDCC1201 [CP035305]
2804587
2804663
+
Ile
GAT
-
¡û
>C191138652
CP035305
Bacillota
Heyndrickxia coagulans IDCC1201 [CP035305]
2898669
2898745
+
Ile
GAT
-
¡û
>W141622700
JJRY01000006
Bacillota
Schinkia azotoformans MEV2011 [JJRY]
190210
190286
+
Ile
GAT
[ENA]
¡û
>W141622717
JJRY01000008
Bacillota
Schinkia azotoformans MEV2011 [JJRY]
2309
2384
+
Ile
GAT
[ENA]
¡û
>W141622742
JJRY01000021
Bacillota
Schinkia azotoformans MEV2011 [JJRY]
75519
75595
+
Ile
GAT
[ENA]
¡û
>W141622753
JJRY01000054
Bacillota
Schinkia azotoformans MEV2011 [JJRY]
542
618
+
Ile
GAT
[ENA]
¡û
>W1910941022
NJAY01000004
Bacillota
Bacillus xiapuensis FJAT-46582 [NJAY]
265901
265827
-
Ile
GAT
[ENA]
¡û
>W1910941045
NJAY01000005
Bacillota
Bacillus xiapuensis FJAT-46582 [NJAY]
542504
542430
-
Ile
GAT
[ENA]
¡û
>W1910941106
NJAZ01000015
Bacillota
Bacillus sp. FJAT-42315 [NJAZ]
933
1008
+
Ile
GAT
[ENA]
¡û
>W1910941146
NJAZ01000050
Bacillota
Bacillus sp. FJAT-42315 [NJAZ]
194303
194229
-
Ile
GAT
[ENA]
¡û
>W1910941872
NJGA01000068
Bacillota
Caldifermentibacillus hisashii C4 [NJGA]
207
131
-
Ile
GAT
[ENA]
¡û
>W1910941894
NJGA01000108
Bacillota
Caldifermentibacillus hisashii C4 [NJGA]
1071
1146
+
Ile
GAT
[ENA]
¡û
>W1910989298
NKQE01000032
Bacillota
Bacillaceae bacterium SAOS 7 [NKQE]
71701
71627
-
Ile
GAT
[ENA]
¡û
>W1910989340
NKQE01000069
Bacillota
Bacillaceae bacterium SAOS 7 [NKQE]
354
279
-
Ile
GAT
[ENA]
¡û
>W1910993903
NKXN01000098
Bacillota
Bacillaceae bacterium SAS-127 [NKXN]
10061
9987
-
Ile
GAT
[ENA]
¡û
>W1910993921
NKXN01000101
Bacillota
Bacillaceae bacterium SAS-127 [NKXN]
1522
1597
+
Ile
GAT
[ENA]
¡û
>W1911192398
NQYC01000001
Bacillota
Bacillus sp. PK3_68 [NQYC]
1624951
1624877
-
Ile
GAT
[ENA]
¡û
>W1911504218
OESV01000002
Bacillota
Bacillus sp. Marseille-P3661 [OESV]
658158
658083
-
Ile
GAT
[ENA]
¡û
>W1911504236
OESV01000005
Bacillota
Bacillus sp. Marseille-P3661 [OESV]
226189
226114
-
Ile
GAT
[ENA]
¡û
>W1911504281
OESV01000008
Bacillota
Bacillus sp. Marseille-P3661 [OESV]
124224
124300
+
Ile
GAT
[ENA]
¡û
>W1810806832
QRUW01000011
Bacillota
Heyndrickxia coagulans AF24-19 [QRUW]
73233
73157
-
Ile
GAT
[ENA]
¡û
>C151057866
CP009709
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [CP009709]
2219062
2219138
+
Ile
GAT
[Ensembl]
¡û
>C151057876
CP009709
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [CP009709]
2301031
2301107
+
Ile
GAT
[Ensembl]
¡û
>C151087774
CP011939
Bacillota
Heyndrickxia coagulans S-lac [CP011939]
1104980
1105056
+
Ile
GAT
[Ensembl]
¡û
>C151087784
CP011939
Bacillota
Heyndrickxia coagulans S-lac [CP011939]
1195880
1195956
+
Ile
GAT
[Ensembl]
¡û
>C11102698
CP002472
Bacillota
Heyndrickxia coagulans 2-6 [CP002472]
12870
12946
+
Ile
GAT
[Ensembl]
¡û
>W1510562057
CTDX01000011
Bacillota
Bacillus kwashiorkori SIT5 [CTDX]
14411
14338
-
Ile
GAT
[ENA]
¡û
>W1510562087
CTDX01000016
Bacillota
Bacillus kwashiorkori SIT5 [CTDX]
1855
1930
+
Ile
GAT
[ENA]
¡û
>W1510669267
CWJM01000037
Bacillota
Bacillus andreraoultii SIT1 [CWJM]
621
545
-
Ile
GAT
[ENA]
¡û
>W1510669298
CWJM01000046
Bacillota
Bacillus andreraoultii SIT1 [CWJM]
1236
1311
+
Ile
GAT
[ENA]
¡û
>W1511356618
JRUN01000131
Bacillota
Heyndrickxia ginsengihumi M2.11 [JRUN]
514
438
-
Ile
GAT
[ENA]
¡û
>W1511479847
JWIQ02000005
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
693
617
-
Ile
GAT
[ENA]
¡û
>W1511479876
JWIQ02000047
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
25819
25745
-
Ile
GAT
[ENA]
¡û
>W1511479900
JWIQ02000066
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
18592
18519
-
Ile
GAT
[ENA]
¡û
>W1511479930
JWIQ02000089
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
1551
1626
+
Ile
GAT
[ENA]
¡û
>W1511479953
JWIQ02000099
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
7333
7258
-
Ile
GAT
[ENA]
¡û
>W1511479983
JWIQ02000117
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
2514
2439
-
Ile
GAT
[ENA]
¡û
>W1511480013
JWIR02000015
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
9001
8926
-
Ile
GAT
[ENA]
¡û
>W1511480035
JWIR02000025
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
188855
188781
-
Ile
GAT
[ENA]
¡û
>W1511480075
JWIR02000041
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
78008
78084
+
Ile
GAT
[ENA]
¡û
>W1511480079
JWIR02000042
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
17141
17217
+
Ile
GAT
[ENA]
¡û
>W1511480096
JWIR02000070
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
24584
24511
-
Ile
GAT
[ENA]
¡û
>W1511480109
JWIR02000086
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
60125
60050
-
Ile
GAT
[ENA]
¡û
>W1511480125
JWIR02000088
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
4495
4420
-
Ile
GAT
[ENA]
¡û
>W1511505545
JXLO01000001
Bacillota
Bacillus badius DSM 30822 [JXLO]
850191
850267
+
Ile
GAT
[ENA]
¡û
>W1511505566
JXLO01000002
Bacillota
Bacillus badius DSM 30822 [JXLO]
1323373
1323299
-
Ile
GAT
[ENA]
¡û
>W1511505586
JXLO01000004
Bacillota
Bacillus badius DSM 30822 [JXLO]
1510
1584
+
Ile
GAT
[ENA]
¡û
>W1511505649
JXLP01000006
Bacillota
Bacillus badius MTCC 1458 [JXLP]
3245
3171
-
Ile
GAT
[ENA]
¡û
>W1511505653
JXLP01000008
Bacillota
Bacillus badius MTCC 1458 [JXLP]
3305
3229
-
Ile
GAT
[ENA]
¡û
>W1511505686
JXLP01000012
Bacillota
Bacillus badius MTCC 1458 [JXLP]
159449
159375
-
Ile
GAT
[ENA]
¡û
>W1511505783
JXLR01000013
Bacillota
Caldibacillus thermoamylovorans B4064 [JXLR]
35922
35847
-
Ile
GAT
[ENA]
¡û
>W1511505797
JXLR01000110
Bacillota
Caldibacillus thermoamylovorans B4064 [JXLR]
17918
17841
-
Ile
GAT
[ENA]
¡û
>W1511505843
JXLR01000151
Bacillota
Caldibacillus thermoamylovorans B4064 [JXLR]
3108
3183
+
Ile
GAT
[ENA]
¡û
>W1511505857
JXLS01000115
Bacillota
Caldibacillus thermoamylovorans B4065 [JXLS]
60465
60390
-
Ile
GAT
[ENA]
¡û
>W1511505861
JXLS01000116
Bacillota
Caldibacillus thermoamylovorans B4065 [JXLS]
402
326
-
Ile
GAT
[ENA]
¡û
>W1511505863
JXLS01000124
Bacillota
Caldibacillus thermoamylovorans B4065 [JXLS]
12709
12632
-
Ile
GAT
[ENA]
¡û
>W1511505934
JXLT01000088
Bacillota
Caldibacillus thermoamylovorans B4166 [JXLT]
155
231
+
Ile
GAT
[ENA]
¡û
>W1511505937
JXLT01000092
Bacillota
Caldibacillus thermoamylovorans B4166 [JXLT]
14108
14185
+
Ile
GAT
[ENA]
¡û
>W1511505982
JXLT01000148
Bacillota
Caldibacillus thermoamylovorans B4166 [JXLT]
2818
2743
-
Ile
GAT
[ENA]
¡û
>W1511505991
JXLU01000029
Bacillota
Caldibacillus thermoamylovorans B4167 [JXLU]
66639
66562
-
Ile
GAT
[ENA]
¡û
>W1511506018
JXLU01000087
Bacillota
Caldibacillus thermoamylovorans B4167 [JXLU]
2230
2305
+
Ile
GAT
[ENA]
¡û
>W1511506032
JXLU01000109
Bacillota
Caldibacillus thermoamylovorans B4167 [JXLU]
155
231
+
Ile
GAT
[ENA]
¡û
>W1610072733
BCVF01000069
Bacillota
Bacillus badius NBRC 15713 [BCVF]
8956
8882
-
Ile
GAT
[ENA]
¡û
>W1610072738
BCVF01000085
Bacillota
Bacillus badius NBRC 15713 [BCVF]
3156
3082
-
Ile
GAT
[ENA]
¡û
>W1610073616
BCVY01000083
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
8890
8815
-
Ile
GAT
[ENA]
¡û
>W1610974745
LVTO01000010
Bacillota
Bacillus badius [LVTO]
1930
2004
+
Ile
GAT
[ENA]
¡û
>W1610974783
LVTO01000026
Bacillota
Bacillus badius [LVTO]
3198
3124
-
Ile
GAT
[ENA]
¡û
>W1610982355
LWDO01000002
Bacillota
Bacillus badius encimensis [LWDO]
1284
1358
+
Ile
GAT
[ENA]
¡û
>W1610982369
LWDO01000006
Bacillota
Bacillus badius encimensis [LWDO]
102557
102483
-
Ile
GAT
[ENA]
¡û
>W1611052637
MAIG01000002
Bacillota
Bacillus badius encimensis [MAIG]
1284
1358
+
Ile
GAT
[ENA]
¡û
>W1611052651
MAIG01000006
Bacillota
Bacillus badius encimensis [MAIG]
102557
102483
-
Ile
GAT
[ENA]
¡û
>W1611062141
MAYT01000001
Bacillota
Bacillus wudalianchiensis FJAT-27215 [MAYT]
1684
1758
+
Ile
GAT
[ENA]
¡û
>W1611062153
MAYT01000005
Bacillota
Bacillus wudalianchiensis FJAT-27215 [MAYT]
204
278
+
Ile
GAT
[ENA]
¡û
>W1710069851
BCVF01000069
Bacillota
Bacillus badius NBRC 15713 [BCVF]
8956
8882
-
Ile
GAT
[ENA]
¡û
>W1710069856
BCVF01000085
Bacillota
Bacillus badius NBRC 15713 [BCVF]
3156
3082
-
Ile
GAT
[ENA]
¡û
>W1710070734
BCVY01000083
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
8890
8815
-
Ile
GAT
[ENA]
¡û
>W1710531092
FNPI01000006
Bacillota
Evansella caseinilytica caseinilyticus [FNPI]
234214
234290
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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