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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184904 (63 seq.)
>W1710870258
LMKJ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf16 [LMKJ]
581975
582051
+
Arg
ACG
[ENA]
¡û
>W1710870975
LMKY01000001
Alphaproteobacteria
Sphingomonas sp. Leaf29 [LMKY]
447247
447323
+
Arg
ACG
[ENA]
¡û
>W1710871070
LMLA01000001
Alphaproteobacteria
Sphingomonas sp. Leaf32 [LMLA]
1052103
1052179
+
Arg
ACG
[ENA]
¡û
>W1710873845
LMNC01000005
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
198485
198409
-
Arg
ACG
[ENA]
¡û
>W1710876129
LMOY01000013
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
12638
12562
-
Arg
ACG
[ENA]
¡û
>W1711387006
MEGC01000023
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
92194
92118
-
Arg
ACG
[ENA]
¡û
>W1711387007
MEGC01000023
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
92056
91980
-
Arg
ACG
[ENA]
¡û
>C171037002
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
2813655
2813579
-
Arg
ACG
-
¡û
>W131052424
AMYY01000009
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
67332
67408
+
Arg
ACG
[ENA]
¡û
>W131058642
ANFS01000012
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
98191
98115
-
Arg
ACG
[ENA]
¡û
>C019259
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
312778
312854
+
Arg
ACG
[Ensembl]
¡û
>C019317
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
2860908
2860832
-
Arg
ACG
[Ensembl]
¡û
>WENV180029814
FTJL01006475
[FTJL] metagenome; soil
3842
3918
+
Arg
ACG
[ENA]
¢þ
>WENV180039242
LLBY010041095
[LLBY] soil metagenome; soil from tomato rhizosphere
8902
8826
-
Arg
ACG
[ENA]
¢þ
>WENV180231863
OBCO01000019
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
374478
374554
+
Arg
ACG
[ENA]
¢þ
>WENV180232853
OBCP01000018
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
374506
374582
+
Arg
ACG
[ENA]
¢þ
>WENV180294838
OBIZ01001095
[OBIZ] soil metagenome; soil
2445
2521
+
Arg
ACG
[ENA]
¢þ
>WENV180350259
OBLQ010000043
[OBLQ] soil metagenome; soil
19268
19344
+
Arg
ACG
[ENA]
¢þ
>w001260
AAAE01000140
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
33814
33892
+
Arg
ACG
[ENA]
¡û
>WENV180569494
OCLR01000109
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
131938
132014
+
Arg
ACG
[ENA]
¢þ
>WENV180570578
OCLS01000266
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
59689
59613
-
Arg
ACG
[ENA]
¢þ
>WENV180571233
OCLT01000023
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
374471
374547
+
Arg
ACG
[ENA]
¢þ
>WENV180573450
OCLW01000020
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
374499
374575
+
Arg
ACG
[ENA]
¢þ
>WENV180639541
OCRL01000025
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
374471
374547
+
Arg
ACG
[ENA]
¢þ
>WENV180640455
OCRM01000020
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
374499
374575
+
Arg
ACG
[ENA]
¢þ
>WENV181384407
OFRI01000796
[OFRI] wastewater metagenome; Exp Tend VB 90WW
4862
4938
+
Arg
ACG
[ENA]
¢þ
>WENV170004464
AGTN01687426
[AGTN] bioreactor metagenome; poplar biomass
497
421
-
Arg
ACG
[ENA]
¢þ
>WENV170605974
FUWD010577940
[FUWD] metagenome; unknown
77
153
+
Arg
ACG
[ENA]
¢þ
>C181017233
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
2813624
2813548
-
Arg
ACG
-
¡û
>C181191118
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
2813639
2813563
-
Arg
ACG
-
¡û
>C191000561
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
979532
979608
+
Arg
ACG
-
¡û
>C191079636
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
279922
279998
+
Arg
ACG
-
¡û
>C191151019
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
2887985
2887909
-
Arg
ACG
-
¡û
>C191163796
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
2118993
2119069
+
Arg
ACG
-
¡û
>C191166140
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
233016
232940
-
Arg
ACG
-
¡û
>C191189149
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
462820
462744
-
Arg
ACG
-
¡û
>W09102961
AAIP01000010
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
100278
100202
-
Arg
ACG
[ENA]
¡û
>W09104744
AAME01000046
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
28177
28101
-
Arg
ACG
[ENA]
¡û
>W09104759
AAMF01000001
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
998302
998378
+
Arg
ACG
[ENA]
¡û
>W1911491917
OAOQ01000004
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
19001
18925
-
Arg
ACG
[ENA]
¡û
>W1911749448
QWGP01000010
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
53839
53915
+
Arg
ACG
[ENA]
¡û
>W1911766277
QXDK01000007
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
117591
117515
-
Arg
ACG
[ENA]
¡û
>W1810119971
PHSI01000148
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
761
685
-
Arg
ACG
[ENA]
¡û
>W1810463835
PZZW01000003
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
639617
639541
-
Arg
ACG
[ENA]
¡û
>W1810699096
QMCC01000004
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
374871
374947
+
Arg
ACG
[ENA]
¡û
>W1810785205
QRBG01000031
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
374866
374942
+
Arg
ACG
[ENA]
¡û
>W1511221177
JNFC01000045
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
104956
104880
-
Arg
ACG
[ENA]
¡û
>W1511489471
JWSY01000018
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
18045
17969
-
Arg
ACG
[ENA]
¡û
>W1511547880
JZRG01000013
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
12982
12906
-
Arg
ACG
[ENA]
¡û
>W11160185
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
2233232
2233156
-
Arg
ACG
[ENA]
¡û
>C161048362
CP012960
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
2813156
2813080
-
Arg
ACG
-
¡û
>C161089112
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
2886287
2886363
+
Arg
ACG
[Ensembl]
¡û
>W121076805
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
647009
646933
-
Arg
ACG
[ENA]
¡û
>W121102133
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
2813652
2813576
-
Arg
ACG
[ENA]
¡û
>W1610074214
BCWM01000005
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
65307
65383
+
Arg
ACG
[ENA]
¡û
>W1610732124
LMJZ01000014
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
19206
19282
+
Arg
ACG
[ENA]
¡û
>W1610732604
LMKJ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf16 [LMKJ]
581975
582051
+
Arg
ACG
[ENA]
¡û
>W1610733321
LMKY01000001
Alphaproteobacteria
Sphingomonas sp. Leaf29 [LMKY]
447247
447323
+
Arg
ACG
[ENA]
¡û
>W1610733416
LMLA01000001
Alphaproteobacteria
Sphingomonas sp. Leaf32 [LMLA]
1052103
1052179
+
Arg
ACG
[ENA]
¡û
>W1610736191
LMNC01000005
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
198485
198409
-
Arg
ACG
[ENA]
¡û
>W1610738475
LMOY01000013
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
12638
12562
-
Arg
ACG
[ENA]
¡û
>W1710071332
BCWM01000005
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
65307
65383
+
Arg
ACG
[ENA]
¡û
>W1710527055
FNKT01000008
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
73042
73118
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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