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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185059 (44 seq.)
>W1711124650
LUKI01000020
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
170
94
-
Asp
GTC
[ENA]
¡û
>W1711124652
LUKI01000029
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
27026
26950
-
Asp
GTC
[ENA]
¡û
>W1711678547
MRUG01000093
Gammaproteobacteria
Alteromonadales bacterium BS08 [MRUG]
91389
91465
+
Asp
GTC
[ENA]
¡û
>C171103079
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
3974990
3975066
+
Asp
GTC
-
¡û
>C171103092
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
4233481
4233405
-
Asp
GTC
-
¡û
>W131159074
AQUT01000004
Gammaproteobacteria
Teredinibacter turnerae T8602 [AQUT]
59511
59587
+
Asp
GTC
[ENA]
¡û
>W131159076
AQUT01000004
Gammaproteobacteria
Teredinibacter turnerae T8602 [AQUT]
98
22
-
Asp
GTC
[ENA]
¡û
>W131159098
AQUT01000027
Gammaproteobacteria
Teredinibacter turnerae T8602 [AQUT]
54058
53982
-
Asp
GTC
[ENA]
¡û
>W131164128
ARAH01000002
Gammaproteobacteria
Teredinibacter turnerae T7902 [ARAH]
54740
54816
+
Asp
GTC
[ENA]
¡û
>W131164153
ARAH01000031
Gammaproteobacteria
Teredinibacter turnerae T7902 [ARAH]
61509
61433
-
Asp
GTC
[ENA]
¡û
>W131166969
ARCX01000037
Gammaproteobacteria
Teredinibacter turnerae T0609 [ARCX]
4371
4447
+
Asp
GTC
[ENA]
¡û
>W131166992
ARCX01000052
Gammaproteobacteria
Teredinibacter turnerae T0609 [ARCX]
31518
31442
-
Asp
GTC
[ENA]
¡û
>W131166994
ARCX01000052
Gammaproteobacteria
Teredinibacter turnerae T0609 [ARCX]
30858
30782
-
Asp
GTC
[ENA]
¡û
>W131179300
ARMG01000028
Gammaproteobacteria
Teredinibacter turnerae T8402 [ARMG]
59903
59979
+
Asp
GTC
[ENA]
¡û
>W131179302
ARMG01000028
Gammaproteobacteria
Teredinibacter turnerae T8402 [ARMG]
130
54
-
Asp
GTC
[ENA]
¡û
>W131179316
ARMH01000041
Gammaproteobacteria
Teredinibacter turnerae T8412 [ARMH]
42816
42892
+
Asp
GTC
[ENA]
¡û
>W131179326
ARMH01000051
Gammaproteobacteria
Teredinibacter turnerae T8412 [ARMH]
192801
192725
-
Asp
GTC
[ENA]
¡û
>W131219174
ATYI01000010
Gammaproteobacteria
Teredinibacter turnerae T8415 [ATYI]
113114
113190
+
Asp
GTC
[ENA]
¡û
>W131219176
ATYI01000010
Gammaproteobacteria
Teredinibacter turnerae T8415 [ATYI]
56430
56354
-
Asp
GTC
[ENA]
¡û
>W131228589
AUGB01000003
Gammaproteobacteria
Teredinibacter turnerae T8513 [AUGB]
114270
114346
+
Asp
GTC
[ENA]
¡û
>W131228591
AUGB01000003
Gammaproteobacteria
Teredinibacter turnerae T8513 [AUGB]
58378
58302
-
Asp
GTC
[ENA]
¡û
>W131228593
AUGB01000003
Gammaproteobacteria
Teredinibacter turnerae T8513 [AUGB]
57725
57649
-
Asp
GTC
[ENA]
¡û
>C020881
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
2202834
2202910
+
Asp
GTC
[Ensembl]
¡û
>C020897
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
2367696
2367620
-
Asp
GTC
[Ensembl]
¡û
>WENV180281765
OBIA01109573
[OBIA] human gut metagenome; human gut
241
165
-
Asp
GTC
[ENA]
¢þ
>WENV180633322
OCQZ01204939
[OCQZ] human gut metagenome; human gut
12
88
+
Asp
GTC
[ENA]
¢þ
>WENV180714223
ODFV01202964
[ODFV] human metagenome; G_DNA_Stool
9
85
+
Asp
GTC
[ENA]
¢þ
>WENV170963459
MRWG01000200
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
45708
45632
-
Asp
GTC
[ENA]
¢þ
>W141565078
JIBG01000017
Gammaproteobacteria
Teredinibacter turnerae 1133Y.S.0a.04 [JIBG]
53969
54045
+
Asp
GTC
[ENA]
¡û
>W09100569
AABI03000002
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
40009
39933
-
Asp
GTC
[ENA]
¡û
>W09100577
AABI03000006
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
203441
203365
-
Asp
GTC
[ENA]
¡û
>W1911138209
NOXC01000008
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
82636
82712
+
Asp
GTC
[ENA]
¡û
>W1911138212
NOXC01000008
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
162932
162856
-
Asp
GTC
[ENA]
¡û
>C10113882
CP001614
Gammaproteobacteria
Teredinibacter turnerae T7901 [CP001614]
1977703
1977779
+
Asp
GTC
[Ensembl]
¡û
>C10113900
CP001614
Gammaproteobacteria
Teredinibacter turnerae T7901 [CP001614]
1921401
1921325
-
Asp
GTC
[Ensembl]
¡û
>W1510865146
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
3177253
3177329
+
Asp
GTC
[ENA]
¡û
>W1510865148
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
3385296
3385372
+
Asp
GTC
[ENA]
¡û
>W1511573610
LANB01000001
Gammaproteobacteria
Cellvibrionaceae bacterium 1162T.S.0a.05 1162T.S.0a.05 [LANB]
3572281
3572205
-
Asp
GTC
[ENA]
¡û
>W1511573632
LANC01000007
Gammaproteobacteria
Teredinibacter turnerae 991H.S.0a.06 [LANC]
463150
463226
+
Asp
GTC
[ENA]
¡û
>W1511573634
LANC01000007
Gammaproteobacteria
Teredinibacter turnerae 991H.S.0a.06 [LANC]
408421
408345
-
Asp
GTC
[ENA]
¡û
>W1511573636
LANC01000007
Gammaproteobacteria
Teredinibacter turnerae 991H.S.0a.06 [LANC]
407607
407531
-
Asp
GTC
[ENA]
¡û
>WENV071379
AACY023844988
Marine microbial communities from Global Ocean Sampling (GOS)
901
979
+
Asp
GTC
[ENA]
>W1610935622
LUKI01000020
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
170
94
-
Asp
GTC
[ENA]
¡û
>W1610935624
LUKI01000029
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
27026
26950
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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