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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185155 (27 seq.)
>W1711333336
MBPP01000030
Gammaproteobacteria
Marinobacter sp. AC-23 [MBPP]
21011
20935
-
Met
CAT
[ENA]
¡û
>C171066386
CP017715
Gammaproteobacteria
Marinobacter salinus Hb8 [CP017715]
2748169
2748245
+
Met
CAT
-
¡û
>WENV180359278
OBNR01032472
[OBNR] marine metagenome; Seawater_00002010_00002149
55
131
+
Ile2
CAT
[ENA]
¢þ
>WENV180361678
OBNV01163039
[OBNV] marine metagenome; ENVO:00002042
1
77
+
Ile2
CAT
[ENA]
¢þ
>WENV180587238
OCON01107017
[OCON] marine metagenome; seawater
397
321
-
Ile2
CAT
[ENA]
¢þ
>WENV180636974
OCRF01140318
[OCRF] marine metagenome; niskin bottle
205
129
-
Ile2
CAT
[ENA]
¢þ
>WENV180641648
OCRN01020611
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
548
472
-
Ile2
CAT
[ENA]
¢þ
>W141152740
AXCA01000159
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
4514
4438
-
Met
CAT
[ENA]
¡û
>WENV018951
AACY020523060
Marine microbial communities from Global Ocean Sampling (GOS)
1407
1485
+
Met
CAT
[ENA]
>WENV182549563
OJBY01002332
[OJBY] seawater metagenome; Sea water
408
484
+
Ile2
CAT
[ENA]
¢þ
>WENV182574105
OJFR01000045
[OJFR] seawater metagenome; Sea water
42891
42967
+
Ile2
CAT
[ENA]
¢þ
>WENV170015484
AZIH01000062
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
18521
18597
+
Met
CAT
[ENA]
¢þ
>WENV170421663
CEUN01091434
[CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
151
227
+
Met
CAT
[ENA]
¢þ
>WENV170703039
LKMJ01005742
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
10939
11015
+
Met
CAT
[ENA]
¢þ
>WENV170842491
MDSZ01241593
[MDSZ] marine metagenome; seawater
30130
30054
-
Met
CAT
[ENA]
¢þ
>WENV170878451
MDTC01076781
[MDTC] marine metagenome; seawater
7629
7705
+
Met
CAT
[ENA]
¢þ
>C181052486
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
2868319
2868243
-
Met
CAT
-
¡û
>C181100509
CP024478
Gammaproteobacteria
Pseudomonas sp. HLS-6 [CP024478]
4751826
4751902
+
Met
CAT
-
¡û
>C191081723
CP031848
Gammaproteobacteria
Marinobacter sp. Arc7-DN-1 [CP031848]
3255162
3255086
-
Met
CAT
-
¡û
>C191147642
CP035952
Gammaproteobacteria
Pseudomonas tructae SNU WT1 [CP035952]
5488648
5488724
+
Met
CAT
-
¡û
>W09102528
AAHZ01000002
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [AAHZ]
190435
190359
-
Met
CAT
[ENA]
¡û
>W1910840495
MZZK01000001
Gammaproteobacteria
Chromohalobacter salexigens ANJ 207 [MZZK]
1352806
1352882
+
Met
CAT
[ENA]
¡û
>W1911802937
QYUR01000002
Gammaproteobacteria
Pseudomonas cavernicola K1S02-6 [QYUR]
570239
570315
+
Met
CAT
[ENA]
¡û
>W1810385098
PXNN01000003
Gammaproteobacteria
Marinobacter halophilus JCM 30472 [PXNN]
564692
564616
-
Met
CAT
[ENA]
¡û
>W1810426085
PYVX01000001
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
980626
980550
-
Met
CAT
[ENA]
¡û
>W1511334710
JQNW01000001
Gammaproteobacteria
Chromohalobacter israelensis 6768 [JQNW]
785039
784963
-
Met
CAT
[ENA]
¡û
>W121019025
AGTR01000008
Gammaproteobacteria
Marinobacter manganoxydans MnI7-9 [AGTR]
17158
17234
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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