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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185161 (117 seq.)
>W1710926768
LOEL01000056
Bacteroidota
Porphyromonas gingivalis [LOEL]
47624
47550
-
Asn
GTT
[ENA]
¡û
>W131111438
APMB01000173
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
14856
14782
-
Asn
GTT
[ENA]
¡û
>W131175798
ARJN01000049
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
21956
22030
+
Asn
GTT
[ENA]
¡û
>W131227810
AUFL01000015
Bacteroidota
Dysgonomonas capnocytophagoides DSM 22835 [AUFL]
138520
138444
-
Asn
GTT
[ENA]
¡û
>W1712084881
NHRU01000010
Bacteroidota
Porphyromonas gingivalis [NHRU]
61680
61606
-
Asn
GTT
[ENA]
¡û
>C016395
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
6773
6700
-
Asn
GTT
[Ensembl]
¡û
>WENV180004032
FLRQ01012876
[FLRQ] metagenome; saliva
432
358
-
Asn
GTT
[ENA]
¢þ
>WENV180006083
FLRX01140203
[FLRX] metagenome; saliva
280
354
+
Asn
GTT
[ENA]
¢þ
>WENV180722572
ODGM01002985
[ODGM] human metagenome; G_DNA_Palatine Tonsils
2495
2421
-
Asn
GTT
[ENA]
¢þ
>WENV180731731
ODGW01008752
[ODGW] human metagenome; G_DNA_Supragingival plaque
151
77
-
Asn
GTT
[ENA]
¢þ
>WENV180759104
ODHY01000595
[ODHY] human metagenome; G_DNA_Buccal mucosa
11848
11774
-
Asn
GTT
[ENA]
¢þ
>W141074425
ASYL01000046
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
14804
14730
-
Asn
GTT
[ENA]
¡û
>WENV180805220
ODJG01101098
[ODJG] human metagenome; G_DNA_Supragingival plaque
118
44
-
Asn
GTT
[ENA]
¢þ
>WENV180845279
ODKT01000082
[ODKT] human metagenome; G_DNA_Supragingival plaque
6114
6188
+
Asn
GTT
[ENA]
¢þ
>WENV180853367
ODKW01080517
[ODKW] human metagenome; G_DNA_Tongue dorsum
197
123
-
Asn
GTT
[ENA]
¢þ
>WENV180857189
ODLA01010054
[ODLA] human metagenome; G_DNA_Buccal mucosa
311
385
+
Asn
GTT
[ENA]
¢þ
>WENV180858397
ODLC01004927
[ODLC] human metagenome; G_DNA_Tongue dorsum
410
336
-
Asn
GTT
[ENA]
¢þ
>WENV180881019
ODLZ01121115
[ODLZ] human metagenome; G_DNA_Tongue dorsum
109
35
-
Asn
GTT
[ENA]
¢þ
>WENV180937242
ODTV01035763
[ODTV] human metagenome; G_DNA_Buccal mucosa
260
186
-
Asn
GTT
[ENA]
¢þ
>WENV180979554
ODVC01000294
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
24336
24410
+
Asn
GTT
[ENA]
¢þ
>WENV180992483
ODVP01013381
[ODVP] human metagenome; G_DNA_Buccal mucosa
421
347
-
Asn
GTT
[ENA]
¢þ
>WENV181006023
ODWA01000509
[ODWA] human metagenome; G_DNA_Buccal mucosa
1723
1649
-
Asn
GTT
[ENA]
¢þ
>WENV181119930
OEFJ01000629
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
444
370
-
Asn
GTT
[ENA]
¢þ
>WENV181182322
OEJV01005860
[OEJV] human metagenome; G_DNA_Supragingival plaque
447
373
-
Asn
GTT
[ENA]
¢þ
>W141145685
AWUV01000119
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
2997
2921
-
Asn
GTT
[ENA]
¡û
>W141145723
AWUW01000108
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
14804
14730
-
Asn
GTT
[ENA]
¡û
>W141145957
AWVC01000100
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
15242
15168
-
Asn
GTT
[ENA]
¡û
>W141146008
AWVD01000119
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
8556
8630
+
Asn
GTT
[ENA]
¡û
>W141146046
AWVE01000093
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
26018
26092
+
Asn
GTT
[ENA]
¡û
>WENV181965491
OGZT01000907
[OGZT] human gut metagenome; faeces
19022
19096
+
Asn
GTT
[ENA]
¢þ
>WENV182004984
OHBE01001210
[OHBE] human gut metagenome; faeces
8457
8531
+
Asn
GTT
[ENA]
¢þ
>C08007318
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
6773
6699
-
Asn
GTT
[Ensembl]
¡û
>WENV183507891
OMGZ01000022
[OMGZ] human oral metagenome; human oral
3114
3188
+
Asn
GTT
[ENA]
¢þ
>WENV183507974
OMHA01000062
[OMHA] human oral metagenome; human oral
2946
2872
-
Asn
GTT
[ENA]
¢þ
>WENV183510884
OMHT01000008
[OMHT] human oral metagenome; human oral
8245
8171
-
Asn
GTT
[ENA]
¢þ
>WENV183705012
PDWI01000887
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
17808
17882
+
Asn
GTT
[ENA]
¢þ
>WENV183705419
PDWI01001523
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
18854
18780
-
Asn
GTT
[ENA]
¢þ
>WENV183705905
PDWI01002564
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
14016
13942
-
Asn
GTT
[ENA]
¢þ
>WENV183706106
PDWI01003106
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15965
15891
-
Asn
GTT
[ENA]
¢þ
>WENV183706188
PDWI01003395
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
22423
22497
+
Asn
GTT
[ENA]
¢þ
>WENV183706629
PDWI01004890
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1720
1646
-
Asn
GTT
[ENA]
¢þ
>WENV183708053
PDWI01012623
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8847
8921
+
Asn
GTT
[ENA]
¢þ
>WENV183708674
PDWI01018647
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4467
4541
+
Asn
GTT
[ENA]
¢þ
>WENV183710774
PDWI01053310
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3141
3215
+
Asn
GTT
[ENA]
¢þ
>WENV183714302
PDWI01177152
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1361
1435
+
Asn
GTT
[ENA]
¢þ
>WENV183716005
PDWI01279475
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
492
566
+
Asn
GTT
[ENA]
¢þ
>WENV183721181
PDWJ01057812
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
931
1005
+
Asn
GTT
[ENA]
¢þ
>C181102078
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
1305421
1305495
+
Asn
GTT
-
¡û
>C181102138
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
2296180
2296254
+
Asn
GTT
-
¡û
>C181102192
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
1191710
1191636
-
Asn
GTT
-
¡û
>C181102253
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
110702
110628
-
Asn
GTT
-
¡û
>C181102281
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
2098284
2098358
+
Asn
GTT
-
¡û
>C181102341
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
1116386
1116312
-
Asn
GTT
-
¡û
>C181102389
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
934850
934776
-
Asn
GTT
-
¡û
>C181102416
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
969665
969739
+
Asn
GTT
-
¡û
>C181102469
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
1080155
1080229
+
Asn
GTT
-
¡û
>C181102507
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
155360
155434
+
Asn
GTT
-
¡û
>C181102580
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
1659097
1659023
-
Asn
GTT
-
¡û
>C181123622
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
6773
6699
-
Asn
GTT
-
¡û
>C181123671
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
6775
6701
-
Asn
GTT
-
¡û
>C181123720
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
6773
6699
-
Asn
GTT
-
¡û
>W1910371009
FUFB01000014
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
60790
60716
-
Asn
GTT
[ENA]
¡û
>W1910371052
FUFC01000008
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
15670
15596
-
Asn
GTT
[ENA]
¡û
>W1910371087
FUFD01000011
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
26051
26125
+
Asn
GTT
[ENA]
¡û
>W1910371166
FUFE01000089
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
39987
39913
-
Asn
GTT
[ENA]
¡û
>W1910371197
FUFF01000014
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
215208
215282
+
Asn
GTT
[ENA]
¡û
>W1910371239
FUFG01000035
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
27156
27230
+
Asn
GTT
[ENA]
¡û
>W1910371274
FUFH01000038
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
15036
14962
-
Asn
GTT
[ENA]
¡û
>W1910371304
FUFI01000005
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
48299
48225
-
Asn
GTT
[ENA]
¡û
>W1910371344
FUFJ01000004
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
7332
7258
-
Asn
GTT
[ENA]
¡û
>W1910372581
FUGF01000058
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
49689
49763
+
Asn
GTT
[ENA]
¡û
>W1910372625
FUGG01000051
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
42901
42975
+
Asn
GTT
[ENA]
¡û
>W1911247369
NSLL01000010
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
47791
47717
-
Asn
GTT
[ENA]
¡û
>W1911247412
NSLM01000007
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
26114
26188
+
Asn
GTT
[ENA]
¡û
>W1911247451
NSLN01000013
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
29475
29401
-
Asn
GTT
[ENA]
¡û
>W1911247503
NSLO01000015
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
31306
31380
+
Asn
GTT
[ENA]
¡û
>W1911247530
NSLP01000002
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
60659
60585
-
Asn
GTT
[ENA]
¡û
>W1911247574
NSLQ01000004
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
26113
26187
+
Asn
GTT
[ENA]
¡û
>W1911247639
NSLR01000029
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
27738
27812
+
Asn
GTT
[ENA]
¡û
>W1911247673
NSLS01000008
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
27681
27755
+
Asn
GTT
[ENA]
¡û
>W1911247703
NSLT01000002
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
28477
28551
+
Asn
GTT
[ENA]
¡û
>W1911247779
NSLU01000090
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
5180
5106
-
Asn
GTT
[ENA]
¡û
>W1911247801
NSLV01000009
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
8058
7984
-
Asn
GTT
[ENA]
¡û
>W1911247854
NSLW01000009
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
61640
61566
-
Asn
GTT
[ENA]
¡û
>W1911247874
NSLX01000002
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
80496
80570
+
Asn
GTT
[ENA]
¡û
>W1911709133
QPGS01000026
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
26940
27014
+
Asn
GTT
[ENA]
¡û
>W1810573707
QEKY01000001
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
69196
69272
+
Asn
GTT
[ENA]
¡û
>C151089073
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
6773
6699
-
Asn
GTT
-
¡û
>C151089122
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
6775
6701
-
Asn
GTT
-
¡û
>C11117337
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
6775
6701
-
Asn
GTT
[Ensembl]
¡û
>W1511328339
JQJE01000002
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
35774
35700
-
Asn
GTT
[ENA]
¡û
>W1511336146
JQZY01000030
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
35128
35054
-
Asn
GTT
[ENA]
¡û
>W1511336380
JRAE01000086
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
79821
79747
-
Asn
GTT
[ENA]
¡û
>W1511336409
JRAF01000049
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
133425
133351
-
Asn
GTT
[ENA]
¡û
>W1511336453
JRAG01000021
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
28876
28802
-
Asn
GTT
[ENA]
¡û
>W1511336536
JRAI01000038
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
49890
49964
+
Asn
GTT
[ENA]
¡û
>W1511336602
JRAJ01000018
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
29304
29230
-
Asn
GTT
[ENA]
¡û
>W1511336611
JRAK01000050
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
51338
51264
-
Asn
GTT
[ENA]
¡û
>W1511336656
JRAL01000015
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
87961
88035
+
Asn
GTT
[ENA]
¡û
>W1511336831
JRAQ01000020
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
29315
29241
-
Asn
GTT
[ENA]
¡û
>W1511336857
JRAR01000007
Bacteroidota
Porphyromonas sp. COT-290 OH860 [JRAR]
18529
18455
-
Asn
GTT
[ENA]
¡û
>W1511336865
JRAR01000024
Bacteroidota
Porphyromonas sp. COT-290 OH860 [JRAR]
16800
16724
-
Asn
GTT
[ENA]
¡û
>W1511336917
JRAT01000001
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
15966
15892
-
Asn
GTT
[ENA]
¡û
>W1511343866
JRFC01000003
Bacteroidota
Porphyromonas sp. COT-290 OH3588 [JRFC]
113489
113565
+
Asn
GTT
[ENA]
¡û
>W1511343871
JRFC01000008
Bacteroidota
Porphyromonas sp. COT-290 OH3588 [JRFC]
43926
44000
+
Asn
GTT
[ENA]
¡û
>W1511343910
JRFD01000010
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
13224
13150
-
Asn
GTT
[ENA]
¡û
>C161018164
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
499833
499759
-
Asn
GTT
[Ensembl]
¡û
>C161046963
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
6773
6699
-
Asn
GTT
-
¡û
>C161051807
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
6773
6699
-
Asn
GTT
-
¡û
>W121073570
AJZS01000076
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
512
586
+
Asn
GTT
[ENA]
¡û
>W1610060552
BCBV01000103
Bacteroidota
Porphyromonas gingivalis [BCBV]
7347
7273
-
Asn
GTT
[ENA]
¡û
>W1610784261
LOEL01000056
Bacteroidota
Porphyromonas gingivalis [LOEL]
47624
47550
-
Asn
GTT
[ENA]
¡û
>W1710017873
ASYM01000024
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
14997
14923
-
Asn
GTT
[ENA]
¡û
>W1710017927
ASYN01000118
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
14799
14725
-
Asn
GTT
[ENA]
¡û
>W1710017971
ASYO01000075
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
3088
3012
-
Asn
GTT
[ENA]
¡û
>W1710018013
ASYP01000074
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
14984
14910
-
Asn
GTT
[ENA]
¡û
>W1710057807
BCBV01000103
Bacteroidota
Porphyromonas gingivalis [BCBV]
7347
7273
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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