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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185321 (25 seq.)
>WENV180024800
FTIJ01033732
[FTIJ] metagenome; soil
221
297
+
Ile
GAT
[ENA]
¢þ
>WENV180025824
FTIQ01211742
[FTIQ] metagenome; soil
130
206
+
Ile
GAT
[ENA]
¢þ
>WENV180027149
FTIW01379267
[FTIW] metagenome; soil
229
153
-
Ile
GAT
[ENA]
¢þ
>WENV180027910
FTIZ01248736
[FTIZ] metagenome; soil
741
665
-
Ile
GAT
[ENA]
¢þ
>WENV180028668
FTJE01657070
[FTJE] metagenome; soil
28
104
+
Ile
GAT
[ENA]
¢þ
>WENV180028676
FTJE01743161
[FTJE] metagenome; soil
127
51
-
Ile
GAT
[ENA]
¢þ
>WENV180033784
FTKL01186028
[FTKL] metagenome; soil
125
201
+
Ile
GAT
[ENA]
¢þ
>WENV180033881
FTKM01000002
[FTKM] metagenome; soil
73301
73377
+
Ile
GAT
[ENA]
¢þ
>WENV180033940
FTKM01003996
[FTKM] metagenome; soil
3845
3769
-
Ile
GAT
[ENA]
¢þ
>WENV180035225
FTKT01013012
[FTKT] metagenome; soil
3756
3680
-
Ile
GAT
[ENA]
¢þ
>W141136750
AWGC01000064
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
76
1
-
Ile
GAT
[ENA]
¡û
>W141136797
AWGD01000064
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
791
715
-
Ile
GAT
[ENA]
¡û
>W141136799
AWGD01000065
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
791
715
-
Ile
GAT
[ENA]
¡û
>W141136890
AWGF01000025
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
60
136
+
Ile
GAT
[ENA]
¡û
>W141136892
AWGF01000040
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
49
125
+
Ile
GAT
[ENA]
¡û
>WENV183697276
OUNJ010244662
[OUNJ] metagenome; soil
1194
1118
-
Ile
GAT
[ENA]
¢þ
>C191005624
AP018827
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
1590137
1590061
-
Ile
GAT
-
¡û
>C191005637
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
157199
157275
+
Ile
GAT
-
¡û
>C191005640
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
338732
338808
+
Ile
GAT
-
¡û
>W09133891
ACQR01000078
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
1910
1986
+
Ile
GAT
[ENA]
¡û
>W1810503526
QBKE01000011
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
3505
3429
-
Ile
GAT
[ENA]
¡û
>C11100668
CP002395
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
554792
554868
+
Ile
GAT
[Ensembl]
¡û
>C11100690
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
151588
151664
+
Ile
GAT
[Ensembl]
¡û
>C11100700
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
1073837
1073761
-
Ile
GAT
[Ensembl]
¡û
>W11123402
ADUH01000274
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
1742
1818
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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