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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185340 (49 seq.)
>W1711006282
LQOE01000130
Bacillota
Lactococcus sp. DD01 [LQOE]
310
229
-
Leu
TAG
[ENA]
¡û
>W1711228338
LXWL01000014
Bacillota
Lactococcus garvieae [LXWL]
272
353
+
Leu
TAG
[ENA]
¡û
>W1711744871
MUIZ01000005
Bacillota
Lactococcus petauri 159469 [MUIZ]
224273
224192
-
Leu
TAG
[ENA]
¡û
>W1711942791
NBBK01000022
Bacillota
Lactococcus garvieae [NBBK]
9252
9171
-
Leu
TAG
[ENA]
¡û
>W131010406
AHYM01000001
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
5520
5601
+
Leu
TAG
[ENA]
¡û
>W131010442
AHYM01000013
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
101380
101299
-
Leu
TAG
[ENA]
¡û
>W131037544
AMFD01000044
Bacillota
Lactococcus garvieae I113 [AMFD]
309
228
-
Leu
TAG
[ENA]
¡û
>W131037571
AMFE01000065
Bacillota
Lactococcus garvieae Tac2 [AMFE]
9587
9506
-
Leu
TAG
[ENA]
¡û
>W131044522
AMQS01000054
Bacillota
Lactococcus garvieae DCC43 [AMQS]
290
209
-
Leu
TAG
[ENA]
¡û
>W131202418
ASWT01000002
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
727
808
+
Leu
TAG
[ENA]
¡û
>W131202436
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
727
808
+
Leu
TAG
[ENA]
¡û
>WENV180182393
OAWO01020327
[OAWO] human gut metagenome; faeces
363
444
+
Leu
TAG
[ENA]
¢þ
>WENV180455501
OBXO01006192
[OBXO] human gut metagenome; faeces
2041
1960
-
Leu
TAG
[ENA]
¢þ
>W141096200
AVFE01000015
Bacillota
Lactococcus garvieae TRF1 [AVFE]
45551
45470
-
Leu
TAG
[ENA]
¡û
>W141096213
AVFE01000017
Bacillota
Lactococcus garvieae TRF1 [AVFE]
25762
25843
+
Leu
TAG
[ENA]
¡û
>WENV181917481
OGYG01025689
[OGYG] human gut metagenome; faeces
107
26
-
Leu
TAG
[ENA]
¢þ
>W141238118
BBJW01000056
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
311
230
-
Leu
TAG
[ENA]
¡û
>WENV182518522
OIWP01001043
[OIWP] human gut metagenome; faeces
36818
36737
-
Leu
TAG
[ENA]
¢þ
>WENV182619659
OJKH01040678
[OJKH] metagenome; faeces
329
248
-
Leu
TAG
[ENA]
¢þ
>WENV183277031
OLRZ01086771
[OLRZ] human gut metagenome; faeces
301
220
-
Leu
TAG
[ENA]
¢þ
>WENV170547778
CXTS01000699
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
402
321
-
Leu
TAG
[ENA]
¢þ
>WENV170547932
CXTV01000198
[CXTV] Human gut metagenome genome assembly, contig: mB2_contig000833.; ENVO:feces
97
178
+
Leu
TAG
[ENA]
¢þ
>WENV170548337
CXUD01001802
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
396
315
-
Leu
TAG
[ENA]
¢þ
>WENV170549757
CXVH01002489
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
543
462
-
Leu
TAG
[ENA]
¢þ
>WENV170549793
CXVI01001225
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
614
533
-
Leu
TAG
[ENA]
¢þ
>WENV170549801
CXVI01001354
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
1258
1177
-
Leu
TAG
[ENA]
¢þ
>C181001706
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1355582
1355663
+
Leu
TAG
-
¡û
>C181001716
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1623782
1623863
+
Leu
TAG
-
¡û
>C191044536
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1821416
1821335
-
Leu
TAG
-
¡û
>C191044546
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1582328
1582247
-
Leu
TAG
-
¡û
>W1910583267
JXJV01000062
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
263
344
+
Leu
TAG
[ENA]
¡û
>W1810907550
QVHV01000002
Bacillota
Lactococcus petauri AM13-9 [QVHV]
223246
223165
-
Leu
TAG
[ENA]
¡û
>W1510060208
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1319732
1319813
+
Leu
TAG
[ENA]
¡û
>W1510060325
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1319732
1319813
+
Leu
TAG
[ENA]
¡û
>C11112706
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1805620
1805539
-
Leu
TAG
[Ensembl]
¡û
>C11112716
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1565401
1565320
-
Leu
TAG
[Ensembl]
¡û
>C11112766
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1819449
1819368
-
Leu
TAG
[Ensembl]
¡û
>C11112776
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1580295
1580214
-
Leu
TAG
[Ensembl]
¡û
>W1511314706
JPUJ01000053
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
310
229
-
Leu
TAG
[ENA]
¡û
>W11157440
AFCC01000006
Bacillota
Lactococcus garvieae 21881 [AFCC]
232
313
+
Leu
TAG
[ENA]
¡û
>W11157506
AFCD01000046
Bacillota
Lactococcus garvieae 8831 [AFCD]
310
229
-
Leu
TAG
[ENA]
¡û
>W11162739
AFHF01000005
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
4441
4522
+
Leu
TAG
[ENA]
¡û
>W11162766
AFHF01000018
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
32169
32088
-
Leu
TAG
[ENA]
¡û
>W121016375
AGQX01000090
Bacillota
Lactococcus garvieae TB25 [AGQX]
29391
29310
-
Leu
TAG
[ENA]
¡û
>W121016422
AGQY01000137
Bacillota
Lactococcus garvieae LG9 [AGQY]
6937
6856
-
Leu
TAG
[ENA]
¡û
>W121081223
AKFO01000021
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
311
230
-
Leu
TAG
[ENA]
¡û
>W1610856932
LQOE01000130
Bacillota
Lactococcus sp. DD01 [LQOE]
310
229
-
Leu
TAG
[ENA]
¡û
>W1611012255
LXWL01000014
Bacillota
Lactococcus garvieae [LXWL]
272
353
+
Leu
TAG
[ENA]
¡û
>W1710568205
FOTJ01000023
Bacillota
Lactococcus garvieae [FOTJ]
560
641
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK