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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185456 (58 seq.)
>W1710791450
LJNT01000192
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA09 [LJNT]
127
51
-
His
GTG
[ENA]
¡û
>W1710796637
LJSH01000001
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
64662
64738
+
His
GTG
[ENA]
¡û
>W1710853424
LLWQ01000213
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
9333
9257
-
His
GTG
[ENA]
¡û
>W1710991268
LPXO01000001
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
110422
110346
-
His
GTG
[ENA]
¡û
>W1711050818
LRRR01000050
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
7578
7502
-
His
GTG
[ENA]
¡û
>W1712104544
NIPU01000012
Alphaproteobacteria
Haematobacter massiliensis [NIPU]
21294
21218
-
His
GTG
[ENA]
¡û
>W1712104721
NIPY01000030
Alphaproteobacteria
Haematobacter massiliensis [NIPY]
12799
12875
+
His
GTG
[ENA]
¡û
>W1712104746
NIPZ01000019
Alphaproteobacteria
Paracoccus yeei [NIPZ]
58811
58887
+
His
GTG
[ENA]
¡û
>W131214668
ATUJ01000009
Alphaproteobacteria
Paracoccus zeaxanthinifaciens ATCC 21588 [ATUJ]
62172
62248
+
His
GTG
[ENA]
¡û
>WENV180297935
OBJA01118298
[OBJA] soil metagenome; sediment, water from around vicinity
119
43
-
His
GTG
[ENA]
¢þ
>WENV181233544
OFET01000004
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
64618
64694
+
His
GTG
[ENA]
¢þ
>WENV181233856
OFET01000155
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
64026
64102
+
His
GTG
[ENA]
¢þ
>WENV181234723
OFEU01002153
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
945
869
-
His
GTG
[ENA]
¢þ
>W141216621
AZVA01000004
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
9680
9604
-
His
GTG
[ENA]
¡û
>W141277363
JAEN01000011
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
90050
89974
-
His
GTG
[ENA]
¡û
>W141284807
JAME01000005
Alphaproteobacteria
Roseivivax isoporae LMG 25204 [JAME]
29822
29746
-
His
GTG
[ENA]
¡û
>WENV170552925
CXWK01003970
[CXWK] wastewater metagenome; activated sludge
1
77
+
His
GTG
[ENA]
¢þ
>WENV170835857
MDSZ01121104
[MDSZ] marine metagenome; seawater
23214
23290
+
His
GTG
[ENA]
¢þ
>WENV170847919
MDTA01070248
[MDTA] marine metagenome; seawater
21151
21227
+
His
GTG
[ENA]
¢þ
>WENV170958265
MKWU01000711
[MKWU] sponge metagenome;
24282
24358
+
His
GTG
[ENA]
¢þ
>PL191000067
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1523547
1523471
-
His
GTG
[Ensembl]
¡û
>C181099789
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
3468580
3468504
-
His
GTG
-
¡û
>C181117166
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
904874
904950
+
His
GTG
-
¡û
>C181190858
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
329554
329478
-
His
GTG
-
¡û
>C191015680
CP018911
Alphaproteobacteria
Glycocaulis alkaliphilus 6B-8 [CP018911]
1245649
1245725
+
His
GTG
-
¡û
>C191073601
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
1823780
1823704
-
His
GTG
-
¡û
>C191134362
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
57917
57993
+
His
GTG
-
¡û
>C191144244
CP035510
Alphaproteobacteria
Haematobacter massiliensis OT1 [CP035510]
677825
677901
+
His
GTG
-
¡û
>W141558850
JHWH01000001
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
150846
150770
-
His
GTG
[ENA]
¡û
>W09103058
AAIT01000007
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
17072
17148
+
His
GTG
[ENA]
¡û
>W1910236480
FPHO01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
1584002
1584078
+
His
GTG
[ENA]
¡û
>W1911397894
NWMQ01000001
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
158256
158332
+
His
GTG
[ENA]
¡û
>W1810235986
PPGA01000005
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
174323
174399
+
His
GTG
[ENA]
¡û
>W1810426250
PYWA01000003
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
395871
395947
+
His
GTG
[ENA]
¡û
>W1810503529
QBKF01000001
Alphaproteobacteria
Pararhodobacter aggregans DSM 18938 [QBKF]
332960
333036
+
His
GTG
[ENA]
¡û
>W1810535412
QDDR01000001
Alphaproteobacteria
Pararhodobacter aggregans D1-19 [QDDR]
445514
445590
+
His
GTG
[ENA]
¡û
>W1810584001
QEYD01000015
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
79619
79695
+
His
GTG
[ENA]
¡û
>W1810585340
QFCQ01000168
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
1140
1064
-
His
GTG
[ENA]
¡û
>W1810684505
QKYL01000198
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
40318
40394
+
His
GTG
[ENA]
¡û
>W1810761138
QPLK01000001
Alphaproteobacteria
Rhodovulum sp. 12E13 [QPLK]
234680
234604
-
His
GTG
[ENA]
¡û
>W1810762301
QPML01000002
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
15818
15742
-
His
GTG
[ENA]
¡û
>W1810884844
QUMX01000005
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
139113
139189
+
His
GTG
[ENA]
¡û
>W1511348544
JRKN01000003
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
22519
22443
-
His
GTG
[ENA]
¡û
>W1511348623
JRKO01000055
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
30774
30698
-
His
GTG
[ENA]
¡û
>W1511348786
JRKS01000016
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
54036
54112
+
His
GTG
[ENA]
¡û
>W1610655375
LJNT01000192
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA09 [LJNT]
127
51
-
His
GTG
[ENA]
¡û
>W1610660594
LJSH01000001
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
64662
64738
+
His
GTG
[ENA]
¡û
>W1610716548
LLWQ01000213
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
9333
9257
-
His
GTG
[ENA]
¡û
>W1610845940
LPXO01000001
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
110422
110346
-
His
GTG
[ENA]
¡û
>W1610891947
LRRR01000050
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
7578
7502
-
His
GTG
[ENA]
¡û
>W1730026679
MEDI01000564
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
8670
8743
+
His
GTG
[ENA]
¡û
>W1710518443
FNEA01000003
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
20708
20784
+
His
GTG
[ENA]
¡û
>W1710532626
FNQM01000003
Alphaproteobacteria
Rubrimonas cliftonensis [FNQM]
439825
439901
+
His
GTG
[ENA]
¡û
>W1710553412
FOHO01000009
Alphaproteobacteria
Paracoccus homiensis [FOHO]
15654
15578
-
His
GTG
[ENA]
¡û
>W1710555540
FOJO01000004
Alphaproteobacteria
Paracoccus halophilus [FOJO]
209746
209822
+
His
GTG
[ENA]
¡û
>W1710574664
FOYK01000003
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
18787
18863
+
His
GTG
[ENA]
¡û
>W1710581775
FPKI01000023
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
43783
43859
+
His
GTG
[ENA]
¡û
>W1710596190
FTMK01000008
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
38837
38913
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK