This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185506 (21 seq.)
>WENV181173412
OEIV011458619
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
80
4
-
fMet
CAT
[ENA]
¢þ
>WENV181309849
OFIX01017378
[OFIX] marine metagenome; seawater
263
339
+
fMet
CAT
[ENA]
¢þ
>WENV181402745
OFTY01036030
[OFTY] sludge metagenome; sludge
234
158
-
fMet
CAT
[ENA]
¢þ
>WENV183664513
ORJL010386138
[ORJL] groundwater metagenome; groundwater
6
81
+
fMet
CAT
[ENA]
¢þ
>WENV183672970
ORJL011229070
[ORJL] groundwater metagenome; groundwater
136
61
-
fMet
CAT
[ENA]
¢þ
>WENV183672971
ORJL011229109
[ORJL] groundwater metagenome; groundwater
136
61
-
fMet
CAT
[ENA]
¢þ
>WENV170189165
CEPB01125901
[CEPB] marine metagenome genome assembly TARA_057_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
74954
74878
-
Met
CAT
[ENA]
¢þ
>WENV170333935
CESY01107993
[CESY] marine metagenome genome assembly TARA_098_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
258
182
-
Met
CAT
[ENA]
¢þ
>WENV170682993
LFIK01003169
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
13315
13239
-
Met
CAT
[ENA]
¢þ
>WENV170845104
MDTA01017926
[MDTA] marine metagenome; seawater
75017
74941
-
Met
CAT
[ENA]
¢þ
>WENV170863642
MDTB01094047
[MDTB] marine metagenome; seawater
8713
8789
+
Met
CAT
[ENA]
¢þ
>WENV170961874
MLJW01003752
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1467
1543
+
Met
CAT
[ENA]
¢þ
>C191108620
CP033611
Alphaproteobacteria
Rickettsiales endosymbiont of Stachyamoeba lipophora RICK01 [CP033611]
377882
377958
+
Met
CAT
-
¡û
>W1910548458
FZON01000030
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
2070
1994
-
Met
CAT
[ENA]
¡û
>C151045616
CP009217
Alphaproteobacteria
Rickettsiales bacterium Ac37b [CP009217]
26817
26893
+
Met
CAT
[Ensembl]
¡û
>WENV037910
AACY021891091
Marine microbial communities from Global Ocean Sampling (GOS)
161
237
+
Met
CAT
[ENA]
>W1511698462
LGHU01000079
Alphaproteobacteria
Pseudorhodobacter antarcticus KCTC 23700 [LGHU]
167
243
+
Met
CAT
[ENA]
¡û
>C161071222
CP014327
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [CP014327]
1259998
1260074
+
Met
CAT
[Ensembl]
¡û
>C161071226
CP014327
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [CP014327]
1520915
1520991
+
Met
CAT
[Ensembl]
¡û
>C161071254
CP014327
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [CP014327]
1019000
1018924
-
Met
CAT
[Ensembl]
¡û
>W1720001312
JRJD01000001
Alphaproteobacteria
Thalassospira sp. TSL5-1 [JRJD]
10057
10133
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK