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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18559 (21 seq.)
>W1711078523
LSMZ01000004
Bacillota
Clostridium sp. link-BC1 [LSMZ]
78640
78730
+
Ser
CGA
[ENA]
¡û
>W1711222528
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
3288408
3288498
+
Ser
CGA
[ENA]
¡û
>C007125
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
2969231
2969321
+
Ser
CGA
[Ensembl]
¡û
>W141067347
ASAA01000007
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
879249
879339
+
Ser
CGA
[ENA]
¡û
>W08011401
ABVG01000055
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
17074
16987
-
Ser
CGA
[ENA]
¡û
>W141233396
BAVR01000063
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
10721
10631
-
Ser
CGA
[ENA]
¡û
>W141251498
CBQO010000105
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
32069
32159
+
Ser
CGA
[ENA]
¡û
>WENV170008015
AMZC01000223
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
11339
11249
-
Ser
CGA
[ENA]
¢þ
>WENV170688015
LFRM01222204
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6736
6826
+
Ser
CGA
[ENA]
¢þ
>W09100457
AABG04000025
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
31317
31227
-
Ser
CGA
[ENA]
¡û
>W09135649
ACVX01000006
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
5803
5713
-
Ser
CGA
[ENA]
¡û
>W1911496664
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
354721
354631
-
Ser
CGA
[ENA]
¡û
>W1911572303
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
97956
98046
+
Ser
CGA
[ENA]
¡û
>C11106455
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
97956
98046
+
Ser
CGA
[Ensembl]
¡û
>C121005024
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
100620
100710
+
Ser
CGA
[Ensembl]
¡û
>C161060764
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
97956
98046
+
Ser
CGA
-
¡û
>C161097516
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
97743
97833
+
Ser
CGA
-
¡û
>W121061291
AJGS01000011
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
5702
5612
-
Ser
CGA
[ENA]
¡û
>W121061380
AJGT01000048
Bacillota
Acetivibrio thermocellus YS [AJGT]
66992
66902
-
Ser
CGA
[ENA]
¡û
>W1610605607
LFSC01000038
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
6736
6826
+
Ser
CGA
[ENA]
¡û
>W1710726894
LFSC01000038
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
6736
6826
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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