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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185695 (64 seq.)
>W1710897329
LNHV01000165
Gammaproteobacteria
Klebsiella quasipneumoniae pneumoniae [LNHV]
242069
242145
+
Met
CAT
[ENA]
¡û
>W1711346137
MCOM01000040
Gammaproteobacteria
Citrobacter portucalensis freundii [MCOM]
296311
296387
+
Met
CAT
[ENA]
¡û
>W1711825956
MXPE01000009
Gammaproteobacteria
Salmonella enterica [MXPE]
6417
6341
-
Met
CAT
[ENA]
¡û
>W131225220
AUDJ01000044
Gammaproteobacteria
Ferrimonas kyonanensis DSM 18153 [AUDJ]
10192
10268
+
Met
CAT
[ENA]
¡û
>WENV180063742
MPLX02372870
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
559
483
-
fMet
CAT
[ENA]
¢þ
>WENV180085091
MPMD02280187
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
336
412
+
fMet
CAT
[ENA]
¢þ
>WENV180228415
OBBX01003090
[OBBX] human gut metagenome; Infant 1 DOL 13 gut
4
80
+
fMet
CAT
[ENA]
¢þ
>WENV180448881
OBXF01000576
[OBXF] human gut metagenome; faeces
3072
2996
-
fMet
CAT
[ENA]
¢þ
>WENV180560413
OCKG01000018
[OCKG] human gut metagenome; Infant 1 DOL 16 gut
198221
198297
+
fMet
CAT
[ENA]
¢þ
>WENV180623107
OCQD01008207
[OCQD] human gut metagenome; Infant 1 DOL 21 gut
4
80
+
fMet
CAT
[ENA]
¢þ
>WENV180636494
OCRF01010410
[OCRF] marine metagenome; niskin bottle
366
442
+
fMet
CAT
[ENA]
¢þ
>WENV181193263
OEPS011695177
[OEPS] soil metagenome; soil
189
113
-
fMet
CAT
[ENA]
¢þ
>WENV181363744
OFOU01002010
[OFOU] human gut metagenome; human gut
73
-1
-
fMet
CAT
[ENA]
¢þ
>WENV018833
AACY020519743
Marine microbial communities from Global Ocean Sampling (GOS)
6132
6056
-
Met
CAT
[ENA]
>WENV018872
AACY020520682
Marine microbial communities from Global Ocean Sampling (GOS)
2993
2917
-
Met
CAT
[ENA]
>WENV182591494
OJIO01000193
[OJIO] seawater metagenome; Sea water
769
693
-
fMet
CAT
[ENA]
¢þ
>WENV182613249
OJKA01000006
[OJKA] metagenome; faeces
22955
23031
+
fMet
CAT
[ENA]
¢þ
>WENV182613375
OJKA01000125
[OJKA] metagenome; faeces
1792
1716
-
fMet
CAT
[ENA]
¢þ
>WENV182804948
OJUY01001986
[OJUY] human gut metagenome; human gut
121
45
-
fMet
CAT
[ENA]
¢þ
>WENV182835651
OKFP01000005
[OKFP] human gut metagenome; human gut
23142
23066
-
fMet
CAT
[ENA]
¢þ
>WENV183794252
PVBE010080626
[PVBE] marine metagenome; water
449
525
+
fMet
CAT
[ENA]
¢þ
>WENV183797950
PVBE010377128
[PVBE] marine metagenome; water
265
341
+
fMet
CAT
[ENA]
¢þ
>WENV183800124
PVBE010565473
[PVBE] marine metagenome; water
320
396
+
fMet
CAT
[ENA]
¢þ
>C181059716
CP022151
Gammaproteobacteria
Citrobacter freundii 705SK3 [CP022151]
962035
961959
-
Met
CAT
-
¡û
>C181061411
CP022273
Gammaproteobacteria
Citrobacter freundii 18-1 [CP022273]
4161637
4161561
-
Met
CAT
-
¡û
>C181129726
CP026231
Gammaproteobacteria
Citrobacter freundii complex sp. CFNIH4 [CP026231]
3336715
3336791
+
Met
CAT
-
¡û
>C181175006
CP029141
Gammaproteobacteria
Klebsiella michiganensis AR375 [CP029141]
2593740
2593816
+
Met
CAT
-
¡û
>C181184377
CP029727
Gammaproteobacteria
Citrobacter sp. CRE-46 AR_0157 [CP029727]
1853438
1853362
-
Met
CAT
-
¡û
>C181186620
CP029992
Gammaproteobacteria
Salmonella enterica subsp. salamae serovar 56:z10:e,n,x SA20011914 [CP029992]
3040889
3040813
-
Met
CAT
-
¡û
>C191110824
CP033742
Gammaproteobacteria
Citrobacter freundii FDAARGOS_550 [CP033742]
1586525
1586601
+
Met
CAT
-
¡û
>C191137085
CP035214
Gammaproteobacteria
Klebsiella michiganensis M82255 [CP035214]
1809488
1809564
+
Met
CAT
-
¡û
>W141775920
JOKG01000001
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
927023
926947
-
Met
CAT
[ENA]
¡û
>W1910471711
FXBG01000008
Gammaproteobacteria
Klebsiella quasipneumoniae VRCO0039 [FXBG]
124695
124619
-
Met
CAT
[ENA]
¡û
>W1911396268
NWER01000001
Gammaproteobacteria
Klebsiella oxytoca WCHKO085010 [NWER]
119756
119680
-
Met
CAT
[ENA]
¡û
>W1911596712
PNHJ01000005
Gammaproteobacteria
Citrobacter freundii UMB1094 [PNHJ]
276099
276175
+
Met
CAT
[ENA]
¡û
>W1810093612
PGII01000004
Gammaproteobacteria
Citrobacter freundii YDC691 [PGII]
70096
70020
-
Met
CAT
[ENA]
¡û
>W1810135436
PIEQ01000190
Gammaproteobacteria
Klebsiella quasipneumoniae D65 [PIEQ]
7761
7837
+
Met
CAT
[ENA]
¡û
>W1810251092
PQFB01000003
Gammaproteobacteria
Citrobacter freundii 236-17-2 [PQFB]
461402
461326
-
Met
CAT
[ENA]
¡û
>W1810266638
PQVW01000008
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
107121
107045
-
Met
CAT
[ENA]
¡û
>W1810268544
PRDB01000015
Gammaproteobacteria
Klebsiella michiganensis DSM 25444 [PRDB]
189949
189873
-
Met
CAT
[ENA]
¡û
>W1810381743
PXLE01000016
Gammaproteobacteria
Citrobacter freundii CRE20 [PXLE]
135724
135800
+
Met
CAT
[ENA]
¡û
>C151095613
CP012554
Gammaproteobacteria
Citrobacter portucalensis P10159 [CP012554]
3840181
3840105
-
Met
CAT
-
¡û
>W1511393917
JTAV01000001
Gammaproteobacteria
Citrobacter koseri FDAARGOS_86 [JTAV]
3204683
3204607
-
Met
CAT
[ENA]
¡û
>W1511662487
LEUS01000017
Gammaproteobacteria
Klebsiella michiganensis MGH87 [LEUS]
175268
175344
+
Met
CAT
[ENA]
¡û
>W121099341
AKTT01000012
Gammaproteobacteria
Citrobacter sp. A1 [AKTT]
31310
31386
+
Met
CAT
[ENA]
¡û
>W1610003737
AGDH01000019
Gammaproteobacteria
Klebsiella oxytoca 09-7231 [AGDH]
58879
58955
+
Met
CAT
[ENA]
¡û
>W1610480156
FKYT01000014
Gammaproteobacteria
Klebsiella oxytoca [FKYT]
59823
59899
+
Met
CAT
[ENA]
¡û
>W1610481519
FKZM01000023
Gammaproteobacteria
Klebsiella michiganensis oxytoca [FKZM]
58369
58445
+
Met
CAT
[ENA]
¡û
>W1610482817
FLAF01000002
Gammaproteobacteria
Klebsiella oxytoca [FLAF]
279335
279411
+
Met
CAT
[ENA]
¡û
>W1610492959
FLFR01000005
Gammaproteobacteria
Klebsiella quasipneumoniae pneumoniae [FLFR]
124591
124515
-
Met
CAT
[ENA]
¡û
>W1610537307
JRTA01000032
Gammaproteobacteria
Citrobacter freundii [JRTA]
181
105
-
Met
CAT
[ENA]
¡û
>W1610757733
LNHV01000165
Gammaproteobacteria
Klebsiella quasipneumoniae pneumoniae [LNHV]
242069
242145
+
Met
CAT
[ENA]
¡û
>W1610994653
LXET01000010
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
115263
115187
-
Met
CAT
[ENA]
¡û
>WENV078268
AAFZ01018519
Fossil microbial community from Whale Fall (Santa Cruz Basin)
790
714
-
Met
CAT
[ENA]
>W1750058604
MCJD01000120
Gammaproteobacteria
Citrobacter portucalensis freundii [MCJD]
72
-2
-
Met
CAT
[ENA]
¡û
>W1750058606
MCJD01000133
Gammaproteobacteria
Citrobacter portucalensis freundii [MCJD]
228
301
+
Met
CAT
[ENA]
¡û
>W1750086464
NEYS01000013
Gammaproteobacteria
Citrobacter werkmanii [NEYS]
83796
83869
+
Met
CAT
[ENA]
¡û
>W1730032137
MOCL01000116
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [MOCL]
170387
170460
+
Met
CAT
[ENA]
¡û
>W1710004246
AGDH01000019
Gammaproteobacteria
Klebsiella oxytoca 09-7231 [AGDH]
58879
58955
+
Met
CAT
[ENA]
¡û
>W1710477836
FKYT01000014
Gammaproteobacteria
Klebsiella oxytoca [FKYT]
59823
59899
+
Met
CAT
[ENA]
¡û
>W1710479199
FKZM01000023
Gammaproteobacteria
Klebsiella michiganensis oxytoca [FKZM]
58369
58445
+
Met
CAT
[ENA]
¡û
>W1710480497
FLAF01000002
Gammaproteobacteria
Klebsiella oxytoca [FLAF]
279335
279411
+
Met
CAT
[ENA]
¡û
>W1710486429
FLFR01000005
Gammaproteobacteria
Klebsiella quasipneumoniae pneumoniae [FLFR]
124591
124515
-
Met
CAT
[ENA]
¡û
>W1710639776
JRTA01000032
Gammaproteobacteria
Citrobacter freundii [JRTA]
181
105
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK