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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185776 (31 seq.)
>W1711043808
LRML01000018
Bacteroidota
Rufibacter roseus [LRML]
82812
82730
-
Leu
TAG
[ENA]
¡û
>W1711043848
LRMM01000099
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
6231
6315
+
Leu
TAG
[ENA]
¡û
>W1711167092
LVWA01000009
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
281815
281731
-
Leu
TAG
[ENA]
¡û
>W131167794
ARDO01000003
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
423278
423196
-
Leu
TAG
[ENA]
¡û
>W131228424
AUFX01000014
Bacteroidota
Sporocytophaga myxococcoides DSM 11118 [AUFX]
142508
142426
-
Leu
TAG
[ENA]
¡û
>WENV180018895
FTBA01000177
[FTBA] metagenome; soil
6500
6582
+
Leu
TAG
[ENA]
¢þ
>WENV180037505
FVAA011150495
[FVAA] soil metagenome; Soil
119
37
-
Leu
TAG
[ENA]
¢þ
>W141152179
AXBP01000010
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
47898
47816
-
Leu
TAG
[ENA]
¡û
>C191018729
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
338747
338665
-
Leu
TAG
-
¡û
>W1910548631
FZOQ01000032
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
48622
48540
-
Leu
TAG
[ENA]
¡û
>W1911749381
QWGE01000007
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
4801
4883
+
Leu
TAG
[ENA]
¡û
>W1810173073
PJMU01000002
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
5133
5215
+
Leu
TAG
[ENA]
¡û
>W1810368078
PVZE01000032
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
5278
5360
+
Leu
TAG
[ENA]
¡û
>W1810503702
QBKI01000004
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
5331
5413
+
Leu
TAG
[ENA]
¡û
>W1810572868
QEKI01000004
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
5701
5783
+
Leu
TAG
[ENA]
¡û
>W1810701230
QMDV01000001
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
6200
6282
+
Leu
TAG
[ENA]
¡û
>W1810789510
QRGR01000028
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
80638
80556
-
Leu
TAG
[ENA]
¡û
>C151056012
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
2561612
2561528
-
Leu
TAG
[Ensembl]
¡û
>C151071878
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
2701868
2701952
+
Leu
TAG
[Ensembl]
¡û
>W1510010463
BBLT01000013
Bacteroidota
Sporocytophaga myxococcoides PG-01 [BBLT]
5009
5091
+
Leu
TAG
[ENA]
¡û
>C161028409
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
254548
254632
+
Leu
TAG
[Ensembl]
¡û
>C161043233
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
470324
470408
+
Leu
TAG
[Ensembl]
¡û
>C161077001
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
3147838
3147754
-
Leu
TAG
-
¡û
>W121084785
AKIS01000159
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
28373
28291
-
Leu
TAG
[ENA]
¡û
>W1610885107
LRML01000018
Bacteroidota
Rufibacter roseus [LRML]
82812
82730
-
Leu
TAG
[ENA]
¡û
>W1610885147
LRMM01000099
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
6231
6315
+
Leu
TAG
[ENA]
¡û
>ENV000116
AC149043
Environmental sample from ENV division of INSDC
9510
9426
-
Leu
TAG
[ENA]
>W1710562174
FOOT01000008
Bacteroidota
Pontibacter chinhatensis [FOOT]
4813
4897
+
Leu
TAG
[ENA]
¡û
>W1710579006
FPCA01000003
Bacteroidota
Pontibacter akesuensis [FPCA]
5020
5104
+
Leu
TAG
[ENA]
¡û
>W1710597858
FTNM01000001
Bacteroidota
Pontibacter lucknowensis [FTNM]
5816
5898
+
Leu
TAG
[ENA]
¡û
>W1710600022
FTPP01000002
Bacteroidota
Pontibacter indicus [FTPP]
1357755
1357673
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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