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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185832 (27 seq.)
>W1710806615
LKBD01000011
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
2
86
+
Tyr
GTA
[ENA]
¡û
>W1710806629
LKBD01000020
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
82839
82923
+
Tyr
GTA
[ENA]
¡û
>W1710806647
LKBD01000038
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
41728
41812
+
Tyr
GTA
[ENA]
¡û
>W1710806663
LKBD01000127
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
504
588
+
Tyr
GTA
[ENA]
¡û
>W1710806664
LKBD01000134
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
2
86
+
Tyr
GTA
[ENA]
¡û
>WENV180635480
OCRD01043675
[OCRD] marine metagenome; seawater
114
30
-
Tyr
GTA
[ENA]
¢þ
>C181010624
CP011039
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [CP011039, CP011040]
126171
126255
+
Tyr
GTA
-
¡û
>C181010701
CP011039
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [CP011039, CP011040]
1343262
1343178
-
Tyr
GTA
-
¡û
>C181010702
CP011039
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [CP011039, CP011040]
1342704
1342620
-
Tyr
GTA
-
¡û
>C181080511
CP023398
Gammaproteobacteria
Pseudoalteromonas spongiae SAO4-4 [CP023398, CP023399]
108661
108745
+
Tyr
GTA
-
¡û
>C181080592
CP023398
Gammaproteobacteria
Pseudoalteromonas spongiae SAO4-4 [CP023398, CP023399]
1376037
1375953
-
Tyr
GTA
-
¡û
>C181080593
CP023398
Gammaproteobacteria
Pseudoalteromonas spongiae SAO4-4 [CP023398, CP023399]
1375374
1375290
-
Tyr
GTA
-
¡û
>W1810249365
PQCB01000010
Gammaproteobacteria
Pseudoalteromonas sp. T1lg24 [PQCB]
37178
37262
+
Tyr
GTA
[ENA]
¡û
>W1810249379
PQCB01000016
Gammaproteobacteria
Pseudoalteromonas sp. T1lg24 [PQCB]
542083
542167
+
Tyr
GTA
[ENA]
¡û
>W1810249380
PQCB01000016
Gammaproteobacteria
Pseudoalteromonas sp. T1lg24 [PQCB]
542676
542760
+
Tyr
GTA
[ENA]
¡û
>C151061228
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
844089
844173
+
Tyr
GTA
[Ensembl]
¡û
>C151061301
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
2097679
2097595
-
Tyr
GTA
[Ensembl]
¡û
>C151061302
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
2097271
2097187
-
Tyr
GTA
[Ensembl]
¡û
>WENV032052
AACY021415311
Marine microbial communities from Global Ocean Sampling (GOS)
46
132
+
Tyr
GTA
[ENA]
>WENV032053
AACY021415311
Marine microbial communities from Global Ocean Sampling (GOS)
514
600
+
Tyr
GTA
[ENA]
>W121025381
AHCE01000002
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [AHCE]
839775
839859
+
Tyr
GTA
[ENA]
¡û
>W121025430
AHCE01000008
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [AHCE]
45824
45908
+
Tyr
GTA
[ENA]
¡û
>W1610670389
LKBD01000011
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
2
86
+
Tyr
GTA
[ENA]
¡û
>W1610670403
LKBD01000020
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
82839
82923
+
Tyr
GTA
[ENA]
¡û
>W1610670421
LKBD01000038
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
41728
41812
+
Tyr
GTA
[ENA]
¡û
>W1610670437
LKBD01000127
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
504
588
+
Tyr
GTA
[ENA]
¡û
>W1610670438
LKBD01000134
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
2
86
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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