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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185907 (41 seq.)
>W1710857617
LMAK01000017
Bacteroidota
Formosa algae [LMAK]
2881
2797
-
Leu
CAA
[ENA]
¡û
>W1711069221
LSFM01000023
Bacteroidota
Polaribacter vadi [LSFM]
651896
651812
-
Leu
CAA
[ENA]
¡û
>W1711359980
MDJD01000007
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
527449
527533
+
Leu
CAA
[ENA]
¡û
>W1711621473
MPDD01000005
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G1 [MPDD]
29544
29460
-
Leu
CAA
[ENA]
¡û
>W1711622849
MPGM01000003
Bacteroidota
Flavobacteriaceae bacterium A100 [MPGM]
70000
69916
-
Leu
CAA
[ENA]
¡û
>W1712097596
NIDK01000001
Bacteroidota
Polaribacter haliotis [NIDK]
472591
472507
-
Leu
CAA
[ENA]
¡û
>W1712097655
NIDL01000006
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
171715
171799
+
Leu
CAA
[ENA]
¡û
>C171063240
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
2816024
2815940
-
Leu
CAA
-
¡û
>C171092542
CP019352
Bacteroidota
Lacinutrix venerupis DOK2-8 [CP019352]
550193
550275
+
Leu
CAA
-
¡û
>C171098460
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
2162231
2162313
+
Leu
CAA
-
¡û
>w013067
AANA01000001
Bacteroidota
Polaribacter sp. MED152 MED152 [AANA]
2084973
2084892
-
Leu
CAA
[ENA]
¡û
>WENV180392844
OBPP01014568
[OBPP] marine metagenome; ENVO:00002042
658
576
-
Leu
CAA
[ENA]
¢þ
>WENV182565759
OJEH01041752
[OJEH] seawater metagenome; Sea water
149
67
-
Leu
CAA
[ENA]
¢þ
>WENV182575358
OJFU01008755
[OJFU] seawater metagenome; Sea water
453
535
+
Leu
CAA
[ENA]
¢þ
>WENV182587501
OJHM01015862
[OJHM] seawater metagenome; Sea water
480
562
+
Leu
CAA
[ENA]
¢þ
>WENV182594313
OJIV01003874
[OJIV] seawater metagenome; Sea water
2442
2524
+
Leu
CAA
[ENA]
¢þ
>WENV170307087
CESJ01118573
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1074
1158
+
Leu
CAA
[ENA]
¢þ
>WENV170327446
CESU01079749
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
307
223
-
Leu
CAA
[ENA]
¢þ
>WENV170625380
FUWD013196925
[FUWD] metagenome; unknown
468
552
+
Leu
CAA
[ENA]
¢þ
>WENV170633620
FUWD013399538
[FUWD] metagenome; unknown
468
552
+
Leu
CAA
[ENA]
¢þ
>WENV170654488
JRYL01000057
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
284261
284177
-
Leu
CAA
[ENA]
¢þ
>C181122718
CP025791
Bacteroidota
Flavivirga eckloniae ECD14 [CP025791]
3338617
3338535
-
Leu
CAA
-
¡û
>W141563388
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
1175818
1175902
+
Leu
CAA
[ENA]
¡û
>W1910758260
MLJY01000012
Bacteroidota
Formosa algae KMM 8021 [MLJY]
30542
30460
-
Leu
CAA
[ENA]
¡û
>W1910796544
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
254058
254142
+
Leu
CAA
[ENA]
¡û
>W1910899197
NGJN01000001
Bacteroidota
Winogradskyella aurantia WNB302 [NGJN]
575005
575087
+
Leu
CAA
[ENA]
¡û
>W1911538895
OMPE01000009
Bacteroidota
Aquimarina sp. AU474 [OMPE]
336137
336055
-
Leu
CAA
[ENA]
¡û
>W1911765442
QXCW01000002
Bacteroidota
Flavobacteriaceae bacterium MAR_2010_72 MAR_2010_72 Mar_2010_72 [QXCW]
3168255
3168173
-
Leu
CAA
[ENA]
¡û
>W1810173142
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
14125
14043
-
Leu
CAA
[ENA]
¡û
>W1810223438
POTB01000001
Bacteroidota
Hanstruepera ponticola L53 [POTB]
1497564
1497482
-
Leu
CAA
[ENA]
¡û
>W1810586297
QFFG01000002
Bacteroidota
Polaribacter aquimarinus ZY113 [QFFG]
599339
599257
-
Leu
CAA
[ENA]
¡û
>W1810682093
QKTV01000006
Bacteroidota
Winogradskyella aurantiaca IMCC20180 [QKTV]
145781
145699
-
Leu
CAA
[ENA]
¡û
>W1810693700
QLLO01000004
Bacteroidota
Olleya aquimaris DSM 24464 [QLLO]
66813
66895
+
Leu
CAA
[ENA]
¡û
>W1810756039
QPEJ01000018
Bacteroidota
Polaribacter sp. WD7 [QPEJ]
244818
244736
-
Leu
CAA
[ENA]
¡û
>W1511296880
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
29123
29039
-
Leu
CAA
[ENA]
¡û
>W1610082016
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2895814
2895896
+
Leu
CAA
[ENA]
¡û
>C131013430
CP004349
Bacteroidota
Polaribacter sp. MED152 [CP004349]
2079091
2079007
-
Leu
CAA
[Ensembl]
¡û
>W1610719998
LMAK01000017
Bacteroidota
Formosa algae [LMAK]
2881
2797
-
Leu
CAA
[ENA]
¡û
>W1610909749
LSFM01000023
Bacteroidota
Polaribacter vadi [LSFM]
651896
651812
-
Leu
CAA
[ENA]
¡û
>W1710080789
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2895814
2895896
+
Leu
CAA
[ENA]
¡û
>W1710570942
FOVN01000001
Bacteroidota
Bizionia echini [FOVN]
1034606
1034690
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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