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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185931 (23 seq.)
>WENV180540068
OCHP01308428
[OCHP] human gut metagenome; human gut
101
25
-
Arg
TCT
[ENA]
¢þ
>WENV181221621
OFCW01000109
[OFCW] microbial mat metagenome; Microbial Mat
6772
6848
+
Arg
TCT
[ENA]
¢þ
>WENV181368203
OFQK01003426
[OFQK] freshwater metagenome; Freshwater Lake
190
114
-
Arg
TCT
[ENA]
¢þ
>WENV181836276
OGVJ01003329
[OGVJ] freshwater metagenome; freshwater
1018
942
-
Arg
TCT
[ENA]
¢þ
>WENV181839300
OGVO01000579
[OGVO] freshwater metagenome; freshwater
2686
2610
-
Arg
TCT
[ENA]
¢þ
>WENV181840144
OGVO01045426
[OGVO] freshwater metagenome; freshwater
178
254
+
Arg
TCT
[ENA]
¢þ
>WENV181841536
OGVS01000632
[OGVS] freshwater metagenome; freshwater
1823
1747
-
Arg
TCT
[ENA]
¢þ
>WENV181841767
OGVS01006005
[OGVS] freshwater metagenome; freshwater
1122
1046
-
Arg
TCT
[ENA]
¢þ
>WENV181847365
OGVY01017345
[OGVY] freshwater metagenome; freshwater
427
351
-
Arg
TCT
[ENA]
¢þ
>WENV181848629
OGVZ01015667
[OGVZ] freshwater metagenome; freshwater
793
869
+
Arg
TCT
[ENA]
¢þ
>WENV181853981
OGWJ01003596
[OGWJ] freshwater metagenome; freshwater
739
663
-
Arg
TCT
[ENA]
¢þ
>WENV181855179
OGWL01001506
[OGWL] freshwater metagenome; freshwater
448
372
-
Arg
TCT
[ENA]
¢þ
>W141241337
CAHF01000011
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
647547
647471
-
Arg
TCT
[ENA]
¡û
>WENV183575474
OOCI01002330
[OOCI] human gut metagenome; human gut
4417
4341
-
Arg
TCT
[ENA]
¢þ
>WENV170573200
FLYJ01003832
[FLYJ] hot springs metagenome; Sediment
504
580
+
Arg
TCT
[ENA]
¢þ
>C181078380
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
789950
790026
+
Arg
TCT
-
¡û
>C181219000
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
704122
704046
-
Arg
TCT
-
¡û
>C181219020
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
980232
980308
+
Arg
TCT
-
¡û
>C181219111
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
635330
635254
-
Arg
TCT
-
¡û
>C191138944
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
2569058
2568982
-
Arg
TCT
-
¡û
>W1911802804
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
2236973
2236897
-
Arg
TCT
[ENA]
¡û
>W1911802889
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
679195
679271
+
Arg
TCT
[ENA]
¡û
>WENV057510
AACY023297084
Marine microbial communities from Global Ocean Sampling (GOS)
1021
1099
+
Arg
TCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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