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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.186087 (77 seq.)
>W1710785311
LJHT01000030
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
23515
23439
-
Pro
GGG
[ENA]
¡û
>W1710859997
LMCN01000011
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
66331
66407
+
Pro
GGG
[ENA]
¡û
>W1710861261
LMDM01000004
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
79965
80041
+
Pro
GGG
[ENA]
¡û
>W1711386280
MEFD01000019
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
18277
18353
+
Pro
GGG
[ENA]
¡û
>W1711387275
MEGM01000019
Betaproteobacteria
Rubrivivax sp. SCN 70-15 [MEGM]
19542
19466
-
Pro
GGG
[ENA]
¡û
>W1711793365
MWLO01000134
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
36948
37024
+
Pro
GGG
[ENA]
¡û
>W1712102947
NIOF01000001
Betaproteobacteria
Roseateles aquatilis [NIOF]
569182
569106
-
Pro
GGG
[ENA]
¡û
>W1712103039
NIOG01000014
Betaproteobacteria
Roseateles terrae [NIOG]
56486
56410
-
Pro
GGG
[ENA]
¡û
>W131178111
ARLH01000091
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
173451
173527
+
Pro
GGG
[ENA]
¡û
>W131236693
AUMO01000041
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
94690
94614
-
Pro
GGG
[ENA]
¡û
>W131236694
AUMO01000041
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
94337
94261
-
Pro
GGG
[ENA]
¡û
>W131214602
ATUI01000001
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
330058
330134
+
Pro
GGG
[ENA]
¡û
>WENV180019440
FTBV01002378
[FTBV] metagenome; soil
7022
7098
+
Pro
GGG
[ENA]
¢þ
>WENV180097980
MTBK01221228
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1608
1684
+
Pro
GGG
[ENA]
¢þ
>WENV180253518
OBEQ010548917
[OBEQ] groundwater metagenome; groundwater
8
84
+
Pro
GGG
[ENA]
¢þ
>WENV180591443
OCOV01022286
[OCOV] marine metagenome; ENVO:01000301
291
215
-
Pro
GGG
[ENA]
¢þ
>WENV181187920
OEOE01002662
[OEOE] activated sludge metagenome; Activated Sludge
466
542
+
Pro
GGG
[ENA]
¢þ
>WENV181222859
OFDC01000413
[OFDC] hot springs metagenome; Water
24758
24834
+
Pro
GGG
[ENA]
¢þ
>WENV181231477
OFEK01030465
[OFEK] activated sludge metagenome; Anaerobic digester
1276
1200
-
Pro
GGG
[ENA]
¢þ
>WENV181414275
OGCL01000167
[OGCL] hot springs metagenome; Hot spring water
35933
36009
+
Pro
GGG
[ENA]
¢þ
>WENV181415596
OGCL01016086
[OGCL] hot springs metagenome; Hot spring water
73
-1
-
Pro
GGG
[ENA]
¢þ
>WENV181643716
OGNI01020103
[OGNI] metagenome; Human gut stool
356
432
+
Pro
GGG
[ENA]
¢þ
>W141169892
AXWS01000012
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
59670
59594
-
Pro
GGG
[ENA]
¡û
>W141170424
AXXZ01000001
Betaproteobacteria
Burkholderia sp. JGI 0001021-N16 [AXXZ]
18571
18495
-
Pro
GGG
[ENA]
¡û
>W141170514
AXYH01000001
Betaproteobacteria
Burkholderia sp. JGI 0001021-N20 [AXYH]
16140
16064
-
Pro
GGG
[ENA]
¡û
>WENV181777024
OGRG01020311
[OGRG] human gut metagenome; faeces
624
700
+
Pro
GGG
[ENA]
¢þ
>WENV181832665
OGUP01051073
[OGUP] human gut metagenome; faeces
510
586
+
Pro
GGG
[ENA]
¢þ
>WENV181836625
OGVJ01015532
[OGVJ] freshwater metagenome; freshwater
396
472
+
Pro
GGG
[ENA]
¢þ
>WENV182018619
OHBX01001771
[OHBX] human gut metagenome; feces
3505
3581
+
Pro
GGG
[ENA]
¢þ
>WENV182111421
OHIR01044352
[OHIR] human gut metagenome; feces
498
574
+
Pro
GGG
[ENA]
¢þ
>WENV182297942
OHWH01040224
[OHWH] human gut metagenome; feces
241
165
-
Pro
GGG
[ENA]
¢þ
>WENV182323537
OHYP01023376
[OHYP] human gut metagenome; feces
642
718
+
Pro
GGG
[ENA]
¢þ
>WENV182988565
OLAF01033119
[OLAF] human gut metagenome; human gut
288
366
+
Pro
GGG
[ENA]
¢þ
>WENV183377914
OLYB01092237
[OLYB] human gut metagenome; feces
664
588
-
Pro
GGG
[ENA]
¢þ
>WENV183382119
OLYK01039587
[OLYK] human gut metagenome; feces
489
413
-
Pro
GGG
[ENA]
¢þ
>WENV183419739
OMAZ01029893
[OMAZ] human gut metagenome; feces
836
760
-
Pro
GGG
[ENA]
¢þ
>WENV183543296
OOAN01004478
[OOAN] human gut metagenome; human gut
263
187
-
Pro
GGG
[ENA]
¢þ
>WENV183580240
OOCM01037128
[OOCM] human gut metagenome; human gut
987
911
-
Pro
GGG
[ENA]
¢þ
>WENV170551322
CXWJ01004211
[CXWJ] wastewater metagenome; activated sludge
8728
8652
-
Pro
GGG
[ENA]
¢þ
>WENV170559021
CXWL01106552
[CXWL] groundwater metagenome; biofilm material
8543
8619
+
Pro
GGG
[ENA]
¢þ
>WENV170651403
JRYF01011803
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
146
70
-
Pro
GGG
[ENA]
¢þ
>WENV170653583
JRYJ01008890
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
47
123
+
Pro
GGG
[ENA]
¢þ
>C181064557
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
2559175
2559099
-
Pro
GGG
-
¡û
>C191182069
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
2896928
2896852
-
Pro
GGG
-
¡û
>W1910015391
BDOQ01000006
Betaproteobacteria
Novimethylophilus kurashikiensis La2-4 [BDOQ]
68180
68104
-
Pro
GGG
[ENA]
¡û
>W1911701414
QNUI01000002
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
52374
52298
-
Pro
GGG
[ENA]
¡û
>W1911702166
QOAZ01000001
Betaproteobacteria
Azohydromonas sediminis SYSU G00088 [QOAZ]
28726
28650
-
Pro
GGG
[ENA]
¡û
>W1911740731
QUSW01000004
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
286941
286865
-
Pro
GGG
[ENA]
¡û
>W1911775028
QXMG01000049
Betaproteobacteria
Caldimonas tepidiphila YIM 730274 [QXMG]
24873
24797
-
Pro
GGG
[ENA]
¡û
>W1810081347
PEOG01000017
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
18977
18901
-
Pro
GGG
[ENA]
¡û
>W1810273280
PSNX01000010
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
239995
240071
+
Pro
GGG
[ENA]
¡û
>W1810666657
QJOU01000033
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
10144
10220
+
Pro
GGG
[ENA]
¡û
>W1810762730
QQAP01000001
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
673549
673625
+
Pro
GGG
[ENA]
¡û
>W1810884647
QUMT01000005
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
12453
12377
-
Pro
GGG
[ENA]
¡û
>C151003081
AP014683
Betaproteobacteria
Burkholderiales bacterium GJ-E10 [AP014683]
1241364
1241440
+
Pro
GGG
[Ensembl]
¡û
>C151081695
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
3470077
3470001
-
Pro
GGG
[Ensembl]
¡û
>W1511433127
JUGZ01000003
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
405994
406070
+
Pro
GGG
[ENA]
¡û
>W1511433220
JUHA01000037
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
37337
37413
+
Pro
GGG
[ENA]
¡û
>W11150923
AEWG01000074
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
117304
117228
-
Pro
GGG
[ENA]
¡û
>C121001099
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
2596313
2596389
+
Pro
GGG
[Ensembl]
¡û
>C161060270
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
1656548
1656624
+
Pro
GGG
[Ensembl]
¡û
>W121060079
AJFF01000018
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
8310
8234
-
Pro
GGG
[ENA]
¡û
>W1610070259
BCTC01000089
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
14131
14207
+
Pro
GGG
[ENA]
¡û
>W1610070260
BCTC01000089
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
14545
14621
+
Pro
GGG
[ENA]
¡û
>W1610074121
BCWK01000004
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
192660
192584
-
Pro
GGG
[ENA]
¡û
>W1610076231
BCYP01000006
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
64704
64780
+
Pro
GGG
[ENA]
¡û
>W121036354
AHLZ01000002
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
2744861
2744785
-
Pro
GGG
[ENA]
¡û
>W1610649117
LJHT01000030
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
23515
23439
-
Pro
GGG
[ENA]
¡û
>W1610722343
LMCN01000011
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
66331
66407
+
Pro
GGG
[ENA]
¡û
>W1610723607
LMDM01000004
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
79965
80041
+
Pro
GGG
[ENA]
¡û
>W1710067632
BCTC01000089
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
14131
14207
+
Pro
GGG
[ENA]
¡û
>W1710067633
BCTC01000089
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
14545
14621
+
Pro
GGG
[ENA]
¡û
>W1710071239
BCWK01000004
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
192660
192584
-
Pro
GGG
[ENA]
¡û
>W1710074046
BCYP01000006
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
64704
64780
+
Pro
GGG
[ENA]
¡û
>W1710544461
FOAV01000004
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
346014
346090
+
Pro
GGG
[ENA]
¡û
>W1710575420
FOZE01000001
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
1016417
1016493
+
Pro
GGG
[ENA]
¡û
>W1710592650
FRCQ01000005
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
60753
60829
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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