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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.186154 (13 seq.)
>WENV180223684
OBBH01004223
[OBBH] human gut metagenome; human gut
312
236
-
Trp
CCA
[ENA]
¢þ
>WENV180240282
OBDC01003610
[OBDC] human gut metagenome; human gut
1547
1623
+
Trp
CCA
[ENA]
¢þ
>WENV180240501
OBDD01003327
[OBDD] human gut metagenome; human gut
1549
1624
+
Trp
CCA
[ENA]
¢þ
>WENV180337307
OBLG01026594
[OBLG] human gut metagenome; human gut
874
798
-
Trp
CCA
[ENA]
¢þ
>WENV180539377
OCHP01007743
[OCHP] human gut metagenome; human gut
1577
1653
+
Trp
CCA
[ENA]
¢þ
>WENV180548830
OCIY01000948
[OCIY] human gut metagenome; human gut
3215
3139
-
Trp
CCA
[ENA]
¢þ
>WENV180649137
OCSK01000612
[OCSK] human gut metagenome; human gut
1766
1842
+
Trp
CCA
[ENA]
¢þ
>WENV181089554
OEBA01044393
[OEBA] human metagenome; G_DNA_Stool
329
405
+
Trp
CCA
[ENA]
¢þ
>WENV181492623
OGFY01031797
[OGFY] metagenome; Human gut stool
743
667
-
Trp
CCA
[ENA]
¢þ
>WENV181638797
OGNC01015090
[OGNC] metagenome; Human gut stool
778
702
-
Trp
CCA
[ENA]
¢þ
>WENV182526564
OIWT01029337
[OIWT] human gut metagenome; faeces
429
353
-
Trp
CCA
[ENA]
¢þ
>WENV182752654
OJRB01032827
[OJRB] human gut metagenome; stool sample
236
160
-
Trp
CCA
[ENA]
¢þ
>WENV183655999
OQWE01002991
[OQWE] human gut metagenome; human gut
122
46
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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