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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18632 (28 seq.)
>W1710801449
LJWX01000001
Betaproteobacteria
Ferrovum sp. JA12 [LJWX]
941536
941626
+
Ser
GGA
[ENA]
¡û
>W1710892656
LNDZ01000006
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
68641
68731
+
Ser
GGA
[ENA]
¡û
>W1711076455
LSLI01000207
Betaproteobacteria
Candidatus Gallionella acididurans [LSLI]
1845
1755
-
Ser
GGA
[ENA]
¡û
>W1711413608
MGWO01000007
Betaproteobacteria
Gallionellales bacterium GWA2_54_124 [MGWO]
842916
842826
-
Ser
GGA
[ENA]
¡û
>W1711413627
MGWP01000037
Betaproteobacteria
Gallionellales bacterium GWA2_55_18 [MGWP]
9501
9591
+
Ser
GGA
[ENA]
¡û
>W1711413770
MGWU01000181
Betaproteobacteria
Gallionellales bacterium RBG_16_56_9 [MGWU]
4871
4781
-
Ser
GGA
[ENA]
¡û
>W1711583361
MNXC01000012
Betaproteobacteria
Gallionellaceae bacterium CG1_02_56_997 [MNXC]
753
663
-
Ser
GGA
[ENA]
¡û
>C171116319
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
1490170
1490080
-
Ser
GGA
-
¡û
>C001374
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
2695011
2694921
-
Ser
GGA
[Ensembl]
¡û
>WENV180038426
FZPV01000027
[FZPV] metagenome; underground water
18958
18868
-
Ser
GGA
[ENA]
¢þ
>WENV180038545
FZPY01000019
[FZPY] metagenome; underground water
24519
24609
+
Ser
GGA
[ENA]
¢þ
>WENV180038564
FZPZ01000072
[FZPZ] metagenome; underground water
14557
14647
+
Ser
GGA
[ENA]
¢þ
>WENV183692061
ORMF011859121
[ORMF] groundwater metagenome; groundwater
13338
13428
+
Ser
GGA
[ENA]
¢þ
>WENV170557287
CXWL01023020
[CXWL] groundwater metagenome; biofilm material
10354
10264
-
Ser
GGA
[ENA]
¢þ
>WENV170559308
CXWL01118747
[CXWL] groundwater metagenome; biofilm material
4075
4165
+
Ser
GGA
[ENA]
¢þ
>C181060450
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
256078
255988
-
Ser
GGA
-
¡û
>C181060493
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
3099198
3099108
-
Ser
GGA
-
¡û
>W09134284
ACSD01000006
Betaproteobacteria
Gallionella capsiferriformans ES-2 [ACSD]
4181
4091
-
Ser
GGA
[ENA]
¡û
>W1910128320
BHGL01000046
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
132706
132616
-
Ser
GGA
[ENA]
¡û
>W1910728345
MGWW01000173
Betaproteobacteria
Gallionellales bacterium RIFCSPHIGHO2_02_FULL_57_16 [MGWW]
14550
14460
-
Ser
GGA
[ENA]
¡û
>W1910728423
MGWZ01000084
Betaproteobacteria
Gallionellales bacterium RIFCSPLOWO2_02_FULL_57_47 [MGWZ]
8842
8752
-
Ser
GGA
[ENA]
¡û
>W1910728474
MGXA01000093
Betaproteobacteria
Gallionellales bacterium RIFCSPLOWO2_02_FULL_59_110 [MGXA]
52622
52712
+
Ser
GGA
[ENA]
¡û
>W1910728502
MGXC01000005
Betaproteobacteria
Gallionellales bacterium RIFCSPLOWO2_12_FULL_59_22 [MGXC]
47042
46952
-
Ser
GGA
[ENA]
¡û
>C10107117
CP002159
Betaproteobacteria
Gallionella capsiferriformans ES-2 [CP002159]
1955247
1955337
+
Ser
GGA
[Ensembl]
¡û
>W1511581015
LARU01000004
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
1172287
1172377
+
Ser
GGA
[ENA]
¡û
>W1610665406
LJWX01000001
Betaproteobacteria
Ferrovum sp. JA12 [LJWX]
941536
941626
+
Ser
GGA
[ENA]
¡û
>W1610752922
LNDZ01000006
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
68641
68731
+
Ser
GGA
[ENA]
¡û
>W1610915760
LSLI01000207
Betaproteobacteria
Candidatus Gallionella acididurans [LSLI]
1845
1755
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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