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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.186612 (69 seq.)
>W1711629971
MPPU01000001
Bacillota
Staphylococcus ureilyticus subsp. urealyticus [MPPU]
782
855
+
Arg
ACG
[ENA]
¡û
>W1711998516
NDWC01000002
Bacillota
Staphylococcus aureus [NDWC]
383
307
-
Arg
ACG
[ENA]
¡û
>C171096101
CP019597
Bacillota
Staphylococcus cohnii SNUDS-2 [CP019597]
1919815
1919888
+
Arg
ACG
-
¡û
>WENV180198890
OBAD01028415
[OBAD] human gut metagenome; ENVO:feces
46
122
+
Arg
ACG
[ENA]
¢þ
>WENV181208500
OFBB01020137
[OFBB] metagenome; hydrothermal vent
198
274
+
Arg
ACG
[ENA]
¢þ
>WENV181208819
OFBC01009371
[OFBC] metagenome; hydrothermal vent
144
220
+
Arg
ACG
[ENA]
¢þ
>WENV181225551
OFDI01007871
[OFDI] metagenome; hydrothermal vent
792
716
-
Arg
ACG
[ENA]
¢þ
>WENV181716017
OGPS01001971
[OGPS] human gut metagenome; faeces
12679
12603
-
Arg
ACG
[ENA]
¢þ
>WENV183280303
OLSB01003242
[OLSB] human gut metagenome; faeces
641
717
+
Arg
ACG
[ENA]
¢þ
>WENV183381649
OLYJ01027180
[OLYJ] human gut metagenome; feces
731
655
-
Arg
ACG
[ENA]
¢þ
>WENV183746967
PPCM01000074
[PPCM] marine sediment metagenome; marine sediment
194
118
-
Arg
ACG
[ENA]
¢þ
>WENV183747295
PPCM01000760
[PPCM] marine sediment metagenome; marine sediment
58
134
+
Arg
ACG
[ENA]
¢þ
>WENV183747322
PPCM01000896
[PPCM] marine sediment metagenome; marine sediment
82
158
+
Arg
ACG
[ENA]
¢þ
>WENV183747345
PPCM01001040
[PPCM] marine sediment metagenome; marine sediment
4326
4250
-
Arg
ACG
[ENA]
¢þ
>WENV183747708
PPCM01020282
[PPCM] marine sediment metagenome; marine sediment
692
616
-
Arg
ACG
[ENA]
¢þ
>C181025796
CP017459
Bacillota
Staphylococcus nepalensis JS9 [CP017459]
1137110
1137183
+
Arg
ACG
-
¡û
>C181025853
CP017460
Bacillota
Staphylococcus nepalensis JS1 [CP017460]
1114493
1114566
+
Arg
ACG
-
¡û
>C181025968
CP017466
Bacillota
Staphylococcus nepalensis JS11 [CP017466]
1195593
1195666
+
Arg
ACG
-
¡û
>C181152707
CP027422
Bacillota
Staphylococcus cohnii FDAARGOS_334 [CP027422]
1738572
1738645
+
Arg
ACG
-
¡û
>W1910221550
FMPF01000010
Bacillota
Staphylococcus cohnii subsp. cohnii 073AN [FMPF]
82602
82529
-
Arg
ACG
[ENA]
¡û
>W1911618098
PPRL01000125
Bacillota
Staphylococcus ureilyticus subsp. urealyticus DSM 6718 [PPRL]
3175
3102
-
Arg
ACG
[ENA]
¡û
>W1911618443
PPRR01000290
Bacillota
Staphylococcus nepalensis DSM 15150 [PPRR]
270
197
-
Arg
ACG
[ENA]
¡û
>W1911781684
QXRZ01000012
Bacillota
Staphylococcus gallinarum SNUC 1388 [QXRZ]
482
406
-
Arg
ACG
[ENA]
¡û
>W1911781842
QXSC01000023
Bacillota
Staphylococcus gallinarum SNUC 741 [QXSC]
38321
38397
+
Arg
ACG
[ENA]
¡û
>W1911781924
QXSD01000090
Bacillota
Staphylococcus gallinarum SNUC 302 [QXSD]
541
465
-
Arg
ACG
[ENA]
¡û
>W1911782954
QXSW01000004
Bacillota
Staphylococcus cohnii SNUC 5133 [QXSW]
792
865
+
Arg
ACG
[ENA]
¡û
>W1911783082
QXSY01000244
Bacillota
Staphylococcus cohnii SNUC 4556 [QXSY]
714
787
+
Arg
ACG
[ENA]
¡û
>W1911783149
QXSZ01000096
Bacillota
Staphylococcus cohnii SNUC 3536 [QXSZ]
660
733
+
Arg
ACG
[ENA]
¡û
>W1911783194
QXTA01000054
Bacillota
Staphylococcus cohnii SNUC 3213 [QXTA]
781
854
+
Arg
ACG
[ENA]
¡û
>W1911783245
QXTB01000041
Bacillota
Staphylococcus cohnii SNUC 1071 [QXTB]
658
731
+
Arg
ACG
[ENA]
¡û
>W1911783324
QXTC01000095
Bacillota
Staphylococcus cohnii SNUC 1067 [QXTC]
7175
7102
-
Arg
ACG
[ENA]
¡û
>W1911786598
QXVM01000172
Bacillota
Staphylococcus gallinarum SNUC 1606 [QXVM]
483
407
-
Arg
ACG
[ENA]
¡û
>W1911786639
QXVN01000118
Bacillota
Staphylococcus nepalensis SNUC 4025 [QXVN]
2018
1945
-
Arg
ACG
[ENA]
¡û
>W1911797874
QYJN01000009
Bacillota
Staphylococcus gallinarum SNUC 4781 [QYJN]
38071
38147
+
Arg
ACG
[ENA]
¡û
>W1911797892
QYJO01000038
Bacillota
Staphylococcus gallinarum SNUC 4633 [QYJO]
482
406
-
Arg
ACG
[ENA]
¡û
>W1911797954
QYJP01000036
Bacillota
Staphylococcus gallinarum SNUC 4583 [QYJP]
541
465
-
Arg
ACG
[ENA]
¡û
>W1911798071
QYJR01000081
Bacillota
Staphylococcus gallinarum SNUC 2913 [QYJR]
9176
9252
+
Arg
ACG
[ENA]
¡û
>W1911798125
QYJS01000047
Bacillota
Staphylococcus gallinarum SNUC 2094 [QYJS]
22996
23072
+
Arg
ACG
[ENA]
¡û
>W1810427641
PYYC01000011
Bacillota
Staphylococcus gallinarum SNUC 1244 [PYYC]
38322
38398
+
Arg
ACG
[ENA]
¡û
>W1810427736
PYYD01000143
Bacillota
Staphylococcus gallinarum SNUC 395 [PYYD]
5657
5733
+
Arg
ACG
[ENA]
¡û
>W1810429732
PYZN01000082
Bacillota
Staphylococcus cohnii SNUC 5710 [PYZN]
7197
7124
-
Arg
ACG
[ENA]
¡û
>W1810429770
PYZO01000042
Bacillota
Staphylococcus cohnii SNUC 5656 [PYZO]
658
731
+
Arg
ACG
[ENA]
¡û
>W1810429824
PYZP01000052
Bacillota
Staphylococcus cohnii SNUC 5124 [PYZP]
656
729
+
Arg
ACG
[ENA]
¡û
>W1810429878
PYZQ01000195
Bacillota
Staphylococcus cohnii SNUC 4640 [PYZQ]
656
729
+
Arg
ACG
[ENA]
¡û
>W1810429938
PYZR01000218
Bacillota
Staphylococcus cohnii SNUC 3829 [PYZR]
656
729
+
Arg
ACG
[ENA]
¡û
>W1810431567
PZAU01000161
Bacillota
Staphylococcus cohnii SNUC 2486 [PZAU]
658
731
+
Arg
ACG
[ENA]
¡û
>W1810431639
PZAV01000137
Bacillota
Staphylococcus cohnii SNUC 2341 [PZAV]
660
733
+
Arg
ACG
[ENA]
¡û
>W1810431682
PZAW01000074
Bacillota
Staphylococcus cohnii SNUC 2129 [PZAW]
656
729
+
Arg
ACG
[ENA]
¡û
>W1810431753
PZAX01000156
Bacillota
Staphylococcus cohnii SNUC 1638 [PZAX]
663
736
+
Arg
ACG
[ENA]
¡û
>W1810431854
PZAZ01000049
Bacillota
Staphylococcus cohnii SNUC 1120 [PZAZ]
792
865
+
Arg
ACG
[ENA]
¡û
>W1810431951
PZBB01000024
Bacillota
Staphylococcus cohnii SNUC 1036 [PZBB]
658
731
+
Arg
ACG
[ENA]
¡û
>W1810432002
PZBC01000162
Bacillota
Staphylococcus cohnii SNUC 969 [PZBC]
658
731
+
Arg
ACG
[ENA]
¡û
>W1810432063
PZBD01000028
Bacillota
Staphylococcus cohnii SNUC 156 [PZBD]
20362
20289
-
Arg
ACG
[ENA]
¡û
>W1810441556
PZHR01000130
Bacillota
Staphylococcus nepalensis SNUC 4337 [PZHR]
2077
2004
-
Arg
ACG
[ENA]
¡û
>W1810443499
PZIZ01000012
Bacillota
Staphylococcus gallinarum SNUC 4861 [PZIZ]
483
407
-
Arg
ACG
[ENA]
¡û
>W1810443510
PZJA01000004
Bacillota
Staphylococcus gallinarum SNUC 5382 [PZJA]
38117
38193
+
Arg
ACG
[ENA]
¡û
>W1810443577
PZJB01000089
Bacillota
Staphylococcus gallinarum SNUC 4236 [PZJB]
483
407
-
Arg
ACG
[ENA]
¡û
>W1810443664
PZJD01000023
Bacillota
Staphylococcus gallinarum SNUC 2111 [PZJD]
23010
23086
+
Arg
ACG
[ENA]
¡û
>W1511474425
JWBS01000142
Bacillota
Staphylococcus aureus 1139.rep2_SAUR [JWBS]
179
255
+
Arg
ACG
[ENA]
¡û
>W1511474442
JWBT01000134
Bacillota
Staphylococcus aureus 1139.rep1_SAUR [JWBT]
179
255
+
Arg
ACG
[ENA]
¡û
>W1511474859
JWCJ01000089
Bacillota
Staphylococcus aureus 1122_SAUR [JWCJ]
172
96
-
Arg
ACG
[ENA]
¡û
>W1511583354
LATU01000005
Bacillota
Staphylococcus cohnii subsp. cohnii 57 [LATU]
117024
116951
-
Arg
ACG
[ENA]
¡û
>W1511583411
LATV01000005
Bacillota
Staphylococcus cohnii subsp. cohnii 532 [LATV]
175854
175781
-
Arg
ACG
[ENA]
¡û
>W1710641067
JRVU01000002
Bacillota
Staphylococcus cohnii [JRVU]
890
817
-
Arg
ACG
[ENA]
¡û
>W1710641119
JRVV01000028
Bacillota
Staphylococcus cohnii [JRVV]
30083
30010
-
Arg
ACG
[ENA]
¡û
>W1710641176
JRVW01000005
Bacillota
Staphylococcus cohnii [JRVW]
30083
30010
-
Arg
ACG
[ENA]
¡û
>W1710641252
JRVX01000102
Bacillota
Staphylococcus cohnii [JRVX]
549
622
+
Arg
ACG
[ENA]
¡û
>W1710641306
JRVY01000096
Bacillota
Staphylococcus cohnii [JRVY]
549
622
+
Arg
ACG
[ENA]
¡û
>W1710641353
JRVZ01000064
Bacillota
Staphylococcus cohnii [JRVZ]
549
622
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK